Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68390 363 / 7e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 317 / 4e-104 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 305 / 1e-99 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 298 / 5e-97 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 296 / 9e-96 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 295 / 1e-95 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G68380 295 / 1e-95 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 291 / 3e-94 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 277 / 1e-85 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 247 / 9e-77 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031958 [exp] 545 / 0 AT1G68390 403 / 2e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035145 [exp] 482 / 2e-170 AT1G68390 393 / 6e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 340 / 2e-112 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 338 / 7e-112 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 308 / 1e-100 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 308 / 1e-100 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 298 / 9e-97 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 298 / 9e-97 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 296 / 5e-96 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121800 [exp] 444 / 6e-154 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 380 / 1e-128 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 328 / 2e-108 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 327 / 3e-108 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G123500 [exp] 313 / 4e-104 AT1G68380 254 / 1e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 315 / 1e-103 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 307 / 2e-100 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 301 / 5e-98 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 301 / 5e-98 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 300 / 7e-98 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10034349 pacid=23176120 polypeptide=Lus10034349 locus=Lus10034349.g ID=Lus10034349.BGIv1.0 annot-version=v1.0 ATGAATGAAGCGGCATTAGTACTGGAAGATAATAACGAGGATTTGGATACGGTAGAGTACATGTCAACGACGGAAGAGGGCTACGGCTACGGCGGCAGTG ACGAAGGAGTTGTTCCGTTCCAGCTTCCATTCGAACGTTACCATAACTTTAACGTAACCAGCCTGTTTGACGACGACGACCACTTCTACGACAATTCATC ATCGTCTCCGAAACCAGCAACTTCATCGACCAATTACATTACCATAGGCCGTACGTACGCCGTCCCGATGAAGAGTCAGCAGCAGCAGCAAAAGGGAATA ATATTATTTCCAAAATGGCACGTCATCAACACGTTCTCATACTTCTTCATATTCGCATGCGGTGTTGCCGCCGGAGTCATCCTCAACTCCTACATCAAAA ACCTCACCTTTGACCTCTACGTCACCAACTTCTCCATTTCCCCTCCTCCTCCTCCTCCTCCAGCCCAGCAGGAACCGGACACGACGACGGCGTTGTTGTG CCAGCCTGCTGCTCCTGTCGCGGCGGTGGGGCCCCTTCCTTCTCGTCCTGCTACGGAGATGGGCCGGGTCGGGTTGAGGGAGTACATGAAGATACCGGAT GCGATGCACGACATGGAGGAAGAAGAGTTGCTGTGGAGGGCTTCCATGGTGCCGAAGGTGAAAGAGTATCCGTTTGGTCGGACTCCGAAAGTGGCGTTTT TGTTTCTGACGAAAGGTCCAATACTGTTAACTCCGATGTGGGAGATGTTCTTCAAAGGCGTTGATCAATCGCTTTACTCCATTTACGTGCATTCCTCCCC CGCTTACGTGGCGCCTCCTGACGAGAGCCCGCTCTTCCGCTCCCGTCGGATTCCCAGCAAGGACGTGGTGTGGGGGAAATTCAACATGATGGAAGCAGAG AGACGCCTACTAGCAAACGCACTCCTCGACATCGCAAACCAACGATTCGTGCTCCTCTCCGAATCATGCATCCCACTCTTCAACTTCTCAACGGTCTACA ACTACCTCATCAACTCAACCCACGTCCACGTGGAGGCCTACGATTCGCCGGCTGCCCGCTCCCGCTACACCCAGGACATGCTGCCGGAGATGAAGATCTC CCAGTGGCGGAAGGGATCCCAGTGGTTCGAGATCGACAGGGAGATTGCGCTCGAGGTGGTCTCCGACAGGAAGTACTTCACCAAGCTGAAGAACCACTGC AAGAACACCGCGTGCTACGTGGACGAGCACTACCTCCCCACGTACCTGAGCATAGAGCACTGGAGGAGGAACTCGAACCGGAGCGTGACCTGGGCGGACT GGTCCTACGGTGGGATCCACCCGAACCGGTACGTGAGGGGTGAGGTCACCGAAGGGTTCTTGGAGAAGCTGAGGAGTGGGAGCGGGCAGTGTTTGTATAA TGGGGAGAGTACGACTACTTGTTTCTTGTTCGCTAGGAAGTTCTTGACAACTTCTTTGGTTAGGCTTGTGAGATATGCACCTAAAGTCATGCACTTCAAT CACTAG
AA sequence Show only first row Show all	>Lus10034349 pacid=23176120 polypeptide=Lus10034349 locus=Lus10034349.g ID=Lus10034349.BGIv1.0 annot-version=v1.0 MNEAALVLEDNNEDLDTVEYMSTTEEGYGYGGSDEGVVPFQLPFERYHNFNVTSLFDDDDHFYDNSSSSPKPATSSTNYITIGRTYAVPMKSQQQQQKGI ILFPKWHVINTFSYFFIFACGVAAGVILNSYIKNLTFDLYVTNFSISPPPPPPPAQQEPDTTTALLCQPAAPVAAVGPLPSRPATEMGRVGLREYMKIPD AMHDMEEEELLWRASMVPKVKEYPFGRTPKVAFLFLTKGPILLTPMWEMFFKGVDQSLYSIYVHSSPAYVAPPDESPLFRSRRIPSKDVVWGKFNMMEAE RRLLANALLDIANQRFVLLSESCIPLFNFSTVYNYLINSTHVHVEAYDSPAARSRYTQDMLPEMKISQWRKGSQWFEIDREIALEVVSDRKYFTKLKNHC KNTACYVDEHYLPTYLSIEHWRRNSNRSVTWADWSYGGIHPNRYVRGEVTEGFLEKLRSGSGQCLYNGESTTTCFLFARKFLTTSLVRLVRYAPKVMHFN H

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10034349 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10004908 [exp]	2.8	0.9819
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	3.5	0.9825
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10011829 [exp]	3.5	0.9792
AT2G45220			Plant invertase/pectin methyle...		Lus10027202 [exp]	4.5	0.9799
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	5.0	0.9866
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	5.8	0.9861
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10004907 [exp]	9.9	0.9789
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	13.8	0.9816
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10027770 [exp]	15.0	0.9759
					Lus10016839 [exp]	15.6	0.9752

Compare expression of checked genes

Lus10034349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.