Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11390 375 / 2e-120 WIT1 WPP domain-interacting protein 1 (.1) AT1G68910 251 / 7e-74 WIT2 WPP domain-interacting protein 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005102 [exp] 711 / 0 AT5G11390 300 / 5e-95 WPP domain-interacting protein 1 (.1) Lus10005101 [exp] 323 / 3e-107 AT5G11390 91 / 2e-21 WPP domain-interacting protein 1 (.1) Lus10029109 [exp] 254 / 3e-75 AT1G68910 487 / 1e-166 WPP domain-interacting protein 2 (.1.2.3) Lus10013053 [exp] 245 / 3e-72 AT1G68910 485 / 5e-166 WPP domain-interacting protein 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106400 [exp] 520 / 3e-176 AT5G11390 510 / 2e-172 WPP domain-interacting protein 1 (.1) Potri.010G135900 [exp] 286 / 3e-87 AT1G68910 473 / 8e-161 WPP domain-interacting protein 2 (.1.2.3) Potri.004G111350 [exp] 47 / 2e-06 AT5G11390 50 / 4e-08 WPP domain-interacting protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034351 pacid=23176021 polypeptide=Lus10034351 locus=Lus10034351.g ID=Lus10034351.BGIv1.0 annot-version=v1.0 ATGGCTGCTTACAAGGCTAGTGATCTTCCTAGTGATATCGACAATAACAATAGCGCGGAAATGGTTGACTCAAGAAAAACAGACTTGTATGAGGAAATGC CCTCGGATGGGGAGACGACAGAGGACTTGGGAACTCCTGAGGGTATTCTAACTCGAGTGCAGTTGGATTTGGCTTATGCGGATGAAAAGTTGCAGAATTT AAGTTTGTTCTCGATGCAAGTGGCAAACAGGGAAGGTGACTTTGAAGCCTTTGTTGCAGTATCAGATGGAGATGTTTTAGCATCAGCAGGAAAGGCTTTG GAATTCGATCTTTTATCTGGGATGTTGGAATCCGTGGTATCTGAGGTGGATCTATACCTGGCAACCTTACAAACTGATATAGCTGATGTTAGTAATTTAC TGTCTTCTTGTGAAGACTTGGGAGGTATATCCTTTGCGCTGGAAGAGAAGTTGCAAGATTGCGAGGAATTATTCAAAGAGGTGCAAGATCAAGTTTCAGC CATTTTGGTGCGGTCTTCAGAATTCGCAAGGATCTTATCATCCGCTCATGGAAAATCAACTGGGAATCGAGAGACGTACGCCTCGGAAGATGAGCAGTGT GTAAACAACAAGTCAACGATTGATATGAAAACTGCACAACACCAACGGCAGATCTTGAGGATGCTTGAAAAGTCTTTGGCAAGGGAGATGGATCATGAAA AGAAGCTGAATGAATCAGCTCAACTTGGTGAAGAGCTGAGTCATATGCTAGAGTCGGCAGAGCAAGAGGTCGTCATTATGGATGAAGAGGCAACAGATGT TTGGGAAAGGTGTTTTGCAGCAGAAAATGCTTCCGAGATCCTGATGGCAATCTCTAAAGAGTTACTGGGTCGGCTCCAAGTTGTACAATTCAATTTGAGT TGCTCGAGTCAAAGGGAAGCGCATCTGAAATCAACGCTTAAAGAATCTTCAGATCAGCTGGATGCTAAAGAACAGTCTTTGCAGAAGTTTAATAGCAGTA GTTCGAAAATGCACGACTTCCTGTTAGCTCAGAGTGATAGTCTGAAAGATAAGTTGGCTGACGCTGAGGACAAATTAGTACTTGCCAATTCCCAGGTCTT CACTCTTAGTGACAAGGTTTGCTTGCTTGAGAAGCAACTGAAAGAATCCGAGTTTCAGATTCTTAACGTTAAGGAATCTGAGGACGGATTTCAGGAGGAG CAAAATGCTTTAGATTCCGAAATCACCCAACTAGAGGACCAAAATGAGGAGCTGGAAGGAAAATTAGCGAAAGCAGAAATTAAAGCTGAAAATGCAGAAA AGAAATGCAAGCTACTGACGGAGACAAATATGGAACTGAATGAAGAGATTGACATACTTAAAGAGAAGGCCGAAAAGGTTGATGTGTTAGAGAAGCAGTT GAAGGATTCTGATATCAGGATCCAACATGCGGTGGCTTCCTCTGAAGCTAGTCAGGAGAAGCAAAGTATGTTGTATTCTACAATCCGGGACATGGAGAAT TTGATTGAGGATCTGAAGTTGAGAGCTTCGAAAGCCGAAAGTCATGCTGATAGCGCGGAGGATAAATGCATCATACTGTCAGAATCTAACGCTGAATTGA ATGAGGAACTGAGTTTTTTGCGGAGTAGACTTGGACGCTTGGAATCGTTTCTGAATCAATCTGAAGAATCAAAATTAGCGACTGCGAAGGGCATTAGCAT CCGAAGTAAAGTGATGACGGATTTAGTTATGCAATTGGCTATTGAGAGAGAACGCCTTCATAAGCAGTTTTCATCACTAGCATCAGAGAATAGAACGTTA TTAATGGCCCTGCAGCAGAAAAAGAAGGATCCAAGTGTAAAACCTAGTAATGAGGGTAGACGAAACAACGAAAAGCATTTGCATCGCGATAGAAAGGAAG CGGGCAAGCCTGCTGATTGTTTAAAGGTGCGAGAGACCCAGAAAACGGCGTTTGGTGGTGAAGGAAGCAGCACATCCGAAGTGAGAGATGTAGTTGATGT AGGGGTGTCCAACTTGAAGCAAGTACTGATGGCAATGGCGGTCCTTATCATTTCAGCAACAATTTACTTCCTTGTACCAGACAAGCACTAA
AA sequence Show only first row Show all	>Lus10034351 pacid=23176021 polypeptide=Lus10034351 locus=Lus10034351.g ID=Lus10034351.BGIv1.0 annot-version=v1.0 MAAYKASDLPSDIDNNNSAEMVDSRKTDLYEEMPSDGETTEDLGTPEGILTRVQLDLAYADEKLQNLSLFSMQVANREGDFEAFVAVSDGDVLASAGKAL EFDLLSGMLESVVSEVDLYLATLQTDIADVSNLLSSCEDLGGISFALEEKLQDCEELFKEVQDQVSAILVRSSEFARILSSAHGKSTGNRETYASEDEQC VNNKSTIDMKTAQHQRQILRMLEKSLAREMDHEKKLNESAQLGEELSHMLESAEQEVVIMDEEATDVWERCFAAENASEILMAISKELLGRLQVVQFNLS CSSQREAHLKSTLKESSDQLDAKEQSLQKFNSSSSKMHDFLLAQSDSLKDKLADAEDKLVLANSQVFTLSDKVCLLEKQLKESEFQILNVKESEDGFQEE QNALDSEITQLEDQNEELEGKLAKAEIKAENAEKKCKLLTETNMELNEEIDILKEKAEKVDVLEKQLKDSDIRIQHAVASSEASQEKQSMLYSTIRDMEN LIEDLKLRASKAESHADSAEDKCIILSESNAELNEELSFLRSRLGRLESFLNQSEESKLATAKGISIRSKVMTDLVMQLAIERERLHKQFSSLASENRTL LMALQQKKKDPSVKPSNEGRRNNEKHLHRDRKEAGKPADCLKVRETQKTAFGGEGSSTSEVRDVVDVGVSNLKQVLMAMAVLIISATIYFLVPDKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10034351 [exp]	0	1
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10022431 [exp]	8.7	0.6372
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	13.3	0.6619
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10040303 [exp]	25.9	0.5982
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	28.7	0.6100
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Lus10012682 [exp]	29.4	0.6057
AT1G05430			unknown protein		Lus10010563 [exp]	29.6	0.6095
AT2G41600			Mitochondrial glycoprotein fam...		Lus10042042 [exp]	29.8	0.6046
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Lus10008660 [exp]	35.4	0.6093
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10032100 [exp]	45.8	0.5458
AT4G32790			Exostosin family protein (.1)		Lus10011120 [exp]	49.4	0.5853

Compare expression of checked genes

Lus10034351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.