Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38840 577 / 0 FHA SMAD/FHA domain-containing protein (.1) AT5G47790 80 / 1e-15 FHA SMAD/FHA domain-containing protein (.1) AT3G20550 69 / 3e-12 FHA DDL DAWDLE, SMAD/FHA domain-containing protein (.1) AT1G34355 53 / 7e-07 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005098 [exp] 1147 / 0 AT5G38840 639 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10003911 [exp] 84 / 1e-16 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10001916 [exp] 82 / 4e-16 AT5G47790 395 / 3e-136 SMAD/FHA domain-containing protein (.1) Lus10004278 [exp] 71 / 7e-13 AT3G20550 320 / 2e-108 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10019235 [exp] 70 / 2e-12 AT3G20550 296 / 5e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10006070 [exp] 52 / 2e-06 AT1G34355 234 / 7e-62 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10009434 [exp] 50 / 1e-05 AT1G34355 233 / 1e-61 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G111500 [exp] 750 / 0 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.006G003100 [exp] 80 / 1e-15 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1) Potri.016G003800 [exp] 77 / 1e-14 AT5G47790 430 / 5e-150 SMAD/FHA domain-containing protein (.1) Potri.001G420400 [exp] 71 / 1e-12 AT3G20550 298 / 4e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.011G136102 [exp] 67 / 6e-12 AT3G20550 226 / 8e-73 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.013G114700 [exp] 56 / 8e-08 AT1G34355 299 / 5e-84 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Potri.009G156700 [exp] 42 / 0.0005 AT2G21530 135 / 4e-40 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10034354 pacid=23176126 polypeptide=Lus10034354 locus=Lus10034354.g ID=Lus10034354.BGIv1.0 annot-version=v1.0 ATGGGTCCGCCTGCGCCCCGAGAGAACAATGAACCTATTGAGCAGAAACCTCAATCCGAAGTCACGGTGAGCTTTGTTGCAGCTGAGCAAGCCCACAAGC GATCATCCGCTGTGCCCTATACCATTCCCGAGTGGAGTGGCCCTCCTTGCCATAAGTTCAACTTGGAGGTTCTTAAAGATGGCTCCATTATCGACCAATT TGAAGTCTTCCAGAAGGGAGCTTACATGTTTGGGCGTGTGGATCTCTGTGACTTTGTTCTTGAGCACCCAACTGTCTCCCGCTTTCATGCAGTTTTGCAG TTTAAAAGAAGTGGAGATGCATACATCTATGATGTAGGGAGCACTCACGGTACTTTTATTAACAAGAGTCAGGTGGAGAAAAGAGTTTACGTCGCTGTAC ACGTGGGTGATGTCATTCGATTTGGCCAATATTTCCTCATGTATAGTTTCTCTTCTTTCAGGTCATCTCGATTGTACATTTTTCAAGGACCTCAAGACCT GATGCCACCGGAAGCGAACCGCAAAGTCCTTAAAAATGCCAGGGCCCAGCAAAATATGCTAGATCGAGAAGCTTCGCTTCACCGAGCAAGAATGGAATCT TGTCTTGCTGATGGTATATCCTGGGGAATGGATGAAGATGCTATTGAAGAAGCTGATGATGATACTGATGAAATAACTTGGCAAACCTACAAAGGGCAGC TCACTGAGAAGCAAGAAAAGACGCGTGATAAAGTCGTTAAACGAAATGAGAAGATTGCACATATGAGGAAAGAAATAGATGCTATTCGTGCCAAAGACAT TTCTCAAGGTGGGTTAACACAAGGGCAGCAAACACAGATAGCTCGCAATGATTTAAGAATAACTCAGTTGATGGAAGAGCTGGAAAGCTTGGAGGAGACT TTAAATGAAAGTATCCGTGAAAGCCTTGGTGCACGCTCAGGAAGGAGTTACGGGGGCAAAAAAGGAGCAGCAGAAGAGGAACAATATTCAAGTGATGAAG ATGATTTTTACGACCGGACAAAGAAGCCTCTTAAAAAAGAGGCTGGGGAAACTCAATCAGTTGAGACTGCGGATAGCTTGCTTGATAAGAGAGATGCTAT CATGAAAGAGATGCAAGAGAAAAAAGACTTGTTTCTCCTTGAGAATAATAAAATCACATCTGAAACTGATGCAGAACCTGAAGCTGCAGATGACCTTGAT GCTTACATGTCTGGACTATCATCCCAGCTAGTCATTGACAAGACTCAAAAGCTTGAGAAGGAGCTAGCTGGCCTTCAATCTGAACTAGATAGAATCATTT ACCTATTGAAGATTGCGGATCCCTCGGGCGAGTTTGCTCAGAAAAGGGAATTGAAGACGCAGGGTAAAATACCTACTATTTCTAAACCAGAAGTATCTCC TGCTTCAAGTGAAACTCACCTTCCCGAGGTGCTGAAAAAAAGTAATAAGTTGGATAAGGCTATCGATCGGCCATCTCGTAAAGCTAAGGACGGTAATGCC GCTCCAGTGCAATCAAACAGCATAGAAGAAGCAGACAAGATTCTTGGCAATGCTCCTGTGGTGAAAGCGACTCCTTATGTTCCTGCAAAACCCCAATGGC TTGGTGCTGTCAGTGACAAGGAAGTGAAAGAGACCGTACAAGAAGTTGTCTTGCCCAATGCGGATGAGTCCGACCAGTTCGTGGATTACAAGGACAGGCA AAAAAATTTGCAGAATGCTGATGGAATTGTAGGTGGCAAATCCGGCCTTATCATAAGGAAGCGTAAAGAAATTGAGAGTAGAGAAGTTGATAGGGAGGCT ACTGAACAGCCAGCATCAGCAGAGTTCAAAGCAGAGGATGCAATTGCTTTGTTACTGAAACACGAAAAGGGATACCATTTGGAAGAAGAGGAATCGAAAC TTGAAAGCCAAGTGGCCTCTGATGTTACCCAAGGTAGCAAGGATACCAAAAGGCCCAAAAGAGTTCTTGGTCCCCAGAAACCATCGTTTCTTCAGGGGGA GTCCGAAAAGGATTTATGGATGCCGCCTGAAGGCCAATCTGGTGACGGACGAACGTCACTGAATGACAGATTCGGATATTAA
AA sequence Show only first row Show all	>Lus10034354 pacid=23176126 polypeptide=Lus10034354 locus=Lus10034354.g ID=Lus10034354.BGIv1.0 annot-version=v1.0 MGPPAPRENNEPIEQKPQSEVTVSFVAAEQAHKRSSAVPYTIPEWSGPPCHKFNLEVLKDGSIIDQFEVFQKGAYMFGRVDLCDFVLEHPTVSRFHAVLQ FKRSGDAYIYDVGSTHGTFINKSQVEKRVYVAVHVGDVIRFGQYFLMYSFSSFRSSRLYIFQGPQDLMPPEANRKVLKNARAQQNMLDREASLHRARMES CLADGISWGMDEDAIEEADDDTDEITWQTYKGQLTEKQEKTRDKVVKRNEKIAHMRKEIDAIRAKDISQGGLTQGQQTQIARNDLRITQLMEELESLEET LNESIRESLGARSGRSYGGKKGAAEEEQYSSDEDDFYDRTKKPLKKEAGETQSVETADSLLDKRDAIMKEMQEKKDLFLLENNKITSETDAEPEAADDLD AYMSGLSSQLVIDKTQKLEKELAGLQSELDRIIYLLKIADPSGEFAQKRELKTQGKIPTISKPEVSPASSETHLPEVLKKSNKLDKAIDRPSRKAKDGNA APVQSNSIEEADKILGNAPVVKATPYVPAKPQWLGAVSDKEVKETVQEVVLPNADESDQFVDYKDRQKNLQNADGIVGGKSGLIIRKRKEIESREVDREA TEQPASAEFKAEDAIALLLKHEKGYHLEEEESKLESQVASDVTQGSKDTKRPKRVLGPQKPSFLQGESEKDLWMPPEGQSGDGRTSLNDRFGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10034354 [exp]	0	1
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10029779 [exp]	2.8	0.8373
AT5G19520		ATMSL9, MSL9	mechanosensitive channel of sm...		Lus10011952 [exp]	15.2	0.8224
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10033422 [exp]	17.5	0.7720
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10034082 [exp]	22.4	0.8105
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029643 [exp]	27.6	0.8064
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10042409 [exp]	28.4	0.7983
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	31.4	0.7909
AT3G44330			unknown protein		Lus10013307 [exp]	32.9	0.7993
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10022905 [exp]	37.5	0.7563
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10010571 [exp]	38.1	0.7512

Compare expression of checked genes

Lus10034354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.