Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15700 1236 / 0 DNA/RNA polymerases superfamily protein (.1.2) AT1G68990 1198 / 0 MGP3 male gametophyte defective 3 (.1.2) AT2G24120 1109 / 0 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005097 [exp] 1842 / 0 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10035150 [exp] 1379 / 0 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10031952 [exp] 1377 / 0 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10019208 [exp] 1150 / 0 AT1G68990 1245 / 0.0 male gametophyte defective 3 (.1.2) Lus10036844 [exp] 1134 / 0 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2) Lus10022181 [exp] 1085 / 0 AT2G24120 1300 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010771 [exp] 659 / 0 AT2G24120 814 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010770 [exp] 413 / 1e-136 AT2G24120 464 / 2e-157 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10019207 [exp] 45 / 0.0001 AT1G68990 73 / 1e-14 male gametophyte defective 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G111600 [exp] 1335 / 0 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.017G105801 [exp] 1305 / 0 AT5G15700 1331 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.010G136700 [exp] 1281 / 0 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.008G112800 [exp] 1273 / 0 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.018G103300 [exp] 1126 / 0 AT2G24120 1381 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.006G181100 [exp] 1103 / 0 AT2G24120 1359 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [flax] [poplar] RNA_pol DNA-dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10034355 pacid=23176049 polypeptide=Lus10034355 locus=Lus10034355.g ID=Lus10034355.BGIv1.0 annot-version=v1.0 ATGTGGATAAACGGAGCCAAACAAGCCATTTCTAGAACTCAGAGAAAAGCATTGACCTCCGCTACTTCATTTTCTCCTCTCTCAAATATTTGCAACTTCC ATATCCTTCTTCCCGGCCAGGGTTTTACTAAGAAATCGAAACTCTATCCGGCTAATGTATCGAATCTACCGCACCAGATTCTCTGGTCCAGAGTTGCAAT TTTGCGTAGAGGGTTCTATTGTGGTGGATTTTGCACGAGAGCTTTCGCGACCGTAGCAGAGGCAGTTCCATCGTCCACGGACGTAGAAGAGGAGTCATTT GCGGAGGAAGTGCAGGAATTGGTGGGAGAAATGCAGAAGGAACGGCGGAGAGAAACTGCGAGGAAGAGATGGCAAAGAATAGCGCCTCCTGGGATGGGTT GGAGGAGGTATGAGGTGTTAAAAAGACGGCAGGTTAAAATTGAGACGGAAGCTTGGGAAAGGGCGGCAAACGAGTACAGGGAACTTCTCAAGGATATGTG CGAGCAAAAGTTGGCTCCTAATTTGCCTTACGTGAAAGGATTGTTGCTTGGGTGGTTCGAGCCCTTGAGAGATGCAATCCTGAAAGAGCAGGAGTTAATC GGCAAAGGCAAGTGCAGAGGTGCCTATGCTCCATATTTGCATCACTTGCCTGCTGATATGATGTGTGTTATCACAATGCATAAGCTGATGAGCGTGATGA TGACATATGGTGAGCATGGTTCTGCTAAGGTTGTTCCTACCGCAATTGCTATTGGTGATGCCGTTGAACAGGAGATTAGAATACACAATTTCTTGGAGAA AATGAAGAGGAAAAAGAATGCCAAAGTTGAGAAAAGTGAAGAAGGCGATGAATCTGCTGGGGAGCAATTGATGTTAAGAAGAAAGATCTCGGAACTGATA AAGAAAAAGAAGTTGCCAGTTGTTAGAAAAATTATGAAAGGTTATGATGATTCAAGACCTTGGAGCCAGGAAGCTAAAGCTAAAGTGGGGAGCCATCTAA TCGAATTACTCATAAAAACTGCGTATATTCAAGCTCCTGTCAATCAACTATGCGACAGTCCTCCTGATATCCGACCAGCATTTACACATACTATGTTGAC TATCACAAGAGAGGATAAGAAGACAAGTAGAAGATATGGTGTCATTAAAACTGATCCGGTAGTCTTTAAAGGACTTGAGAGAAGTGCAAGGCACATGGTG ATCCCTTACATGCCAATGTTGGTGCCTCCAGTCAAGTGGATGGGGAAGACAAGTAGAAGATATGGTGTCATTAAAACTGATCCGGTAGTCTTTAAAGGAC TTGAGAGAAGTGCAAGGCACATGGTGATCCCTTACATGCCAATGTTGGTGCCTCCAGTCAAGTGGATGGGGTATGACAAAGGAGCTTACTTTTTCCTACC TTCCTACATCATGCGCACTCATGGTTCCAGACAACAACGTGAGGCAGTGAAAGTTGCCTCTAGGGCACAACTAGAGCAAGTGTTTGAGGCCCTGGATACA CTTGGAAGTACTAAATGGAGGGTAGATAAAAGGGTACTTAATATTGTAGATAGACTTTGGAACAGTGGAGGCCGTCTTGGTGATTTGGTGGATCGAAATG ATGTTCCTTTGCCAGAGAAGCCAGATACAGAAGATCAAAATTTACTCAAGAAATGGAAATGGAAAGTGAGAAACGCAAAAAAAGAAAACCGGGAGAGGCA TTCCCTCCGCTGTGATACAGAACTAAAACTTTCTGTAGCACGGAAAATGAAGGAGGAAGAAGGATTTTATTATCCACATAATGTTGATTTTCGGGGACGT GCATACCCAATACACCCATACTTGAACCATCTCGGTTCAGATATGTGTCGGGGTATTTTGGAGTTCGGAGAAGGTCGTCCGCTTGGAAACTCAGGTTTGA AATGGTTGAAGATACACCTGGCGAACCTATTCGCTGGTGGTGTGGATAAGTTATCACATGAAGGTCGGATAAGCTTTACTGAGAATCATTTGGAAGATAT ATTTGATTCTGCGGACAAGCCACTGGAAGGACGCCGCTGGTGGTTGCATGCAGAAGATCCATTCCAGTGCTTAGCAGCATGTATTGATCTTACTGAAGCA TTGAGAAATCCCTCTCCGGAGACCTATGTCTCACATCTTCCAATTCATCAGGATGGCTCTTGCAATGGGTTGCAACATTATGCAGCACTTGGGAGGGATA GGTTAGGAGCAGCTGCTGTTAATTTGGTCGCAGGAGAAAAACCAGCTGATGTCTACTCTGGTATAGCGGCAAGAGTTCTTGATATCATGCGGAAGGATGC ACAGAGAGATCCTGCAAGCTTTCCCGATGCTCTATGGGCGAGAGCATTACTTAACCAAGTGGATCGGAAATTGGTGAAGCAGACAGTGATGACATCTGTA TATGGTGTTACTTACATTGGTGCCAGAGATCAAATCCTGAAAAGGTTGAAAGAGCGAGGCACAGTATTGGATCAAACAGAAGCTTTTGCCGCTTCTTGTT ATGCAGCTAAAGTGACATTAACTGGACTGGAGGAGATGTTTGAAGCTGCTCGGAGTATAATGAACTGGCTGGGTGAATGCGCAAAGATTATTGCATCACA AAACCAAGCAGTAAAATGGACAACCCCACTTGGACTTCCTGTGGTACAACCTTACAGGAAACTCGGGCGGCTTCTTATCAAAACATCCCTCCAGGTCTTA ACGCTACAAAGGGAAACCGAAAAGGTCATGGTGAAGAGGCAAAAAACGGCTTTCCCGCCAAATTTTGTTCACTCCTTGGATGGTTCACATATGATGATGA CTGCTGTTGCTTGCAGAAAGGCAGGCTTAAACTTTGCAGGTGTCCATGATTCGTTCTGGACTCACGCATGTGATGTGGATCAACTGAACATGATACTTAG AGAGAAGTTTGTTGAACTCTATGAAGCCCCCATACTAGAGAATCTGTTGGAGAGCTTTGAGCAGTCGTTTCCTAATTCACCGTTTCCCCCTCTGCCAGAA AGAGGAGATTTTGATTTGAGAGAGGTTTTGCAGTCGACCTACTTTTTCAACTAA
AA sequence Show only first row Show all	>Lus10034355 pacid=23176049 polypeptide=Lus10034355 locus=Lus10034355.g ID=Lus10034355.BGIv1.0 annot-version=v1.0 MWINGAKQAISRTQRKALTSATSFSPLSNICNFHILLPGQGFTKKSKLYPANVSNLPHQILWSRVAILRRGFYCGGFCTRAFATVAEAVPSSTDVEEESF AEEVQELVGEMQKERRRETARKRWQRIAPPGMGWRRYEVLKRRQVKIETEAWERAANEYRELLKDMCEQKLAPNLPYVKGLLLGWFEPLRDAILKEQELI GKGKCRGAYAPYLHHLPADMMCVITMHKLMSVMMTYGEHGSAKVVPTAIAIGDAVEQEIRIHNFLEKMKRKKNAKVEKSEEGDESAGEQLMLRRKISELI KKKKLPVVRKIMKGYDDSRPWSQEAKAKVGSHLIELLIKTAYIQAPVNQLCDSPPDIRPAFTHTMLTITREDKKTSRRYGVIKTDPVVFKGLERSARHMV IPYMPMLVPPVKWMGKTSRRYGVIKTDPVVFKGLERSARHMVIPYMPMLVPPVKWMGYDKGAYFFLPSYIMRTHGSRQQREAVKVASRAQLEQVFEALDT LGSTKWRVDKRVLNIVDRLWNSGGRLGDLVDRNDVPLPEKPDTEDQNLLKKWKWKVRNAKKENRERHSLRCDTELKLSVARKMKEEEGFYYPHNVDFRGR AYPIHPYLNHLGSDMCRGILEFGEGRPLGNSGLKWLKIHLANLFAGGVDKLSHEGRISFTENHLEDIFDSADKPLEGRRWWLHAEDPFQCLAACIDLTEA LRNPSPETYVSHLPIHQDGSCNGLQHYAALGRDRLGAAAVNLVAGEKPADVYSGIAARVLDIMRKDAQRDPASFPDALWARALLNQVDRKLVKQTVMTSV YGVTYIGARDQILKRLKERGTVLDQTEAFAASCYAAKVTLTGLEEMFEAARSIMNWLGECAKIIASQNQAVKWTTPLGLPVVQPYRKLGRLLIKTSLQVL TLQRETEKVMVKRQKTAFPPNFVHSLDGSHMMMTAVACRKAGLNFAGVHDSFWTHACDVDQLNMILREKFVELYEAPILENLLESFEQSFPNSPFPPLPE RGDFDLREVLQSTYFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10034355 [exp]	0	1
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038291 [exp]	1.4	0.9063
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	1.7	0.9160
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10021250 [exp]	4.5	0.8996
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	6.3	0.8651
AT5G52820			WD-40 repeat family protein / ...		Lus10029493 [exp]	8.5	0.8821
AT1G42440			unknown protein		Lus10030752 [exp]	10.7	0.8924
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	12.1	0.9041
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10023257 [exp]	12.2	0.8728
AT1G26170			ARM repeat superfamily protein...		Lus10035079 [exp]	13.0	0.8743
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	14.1	0.8833

Compare expression of checked genes

Lus10034355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.