Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30300 879 / 0 O-fucosyltransferase family protein (.1) AT3G03810 584 / 0 EDA30 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) AT5G64600 179 / 1e-48 O-fucosyltransferase family protein (.1) AT4G38390 172 / 4e-46 RHS17 root hair specific 17 (.1) AT1G20550 167 / 4e-44 O-fucosyltransferase family protein (.1) AT1G04910 164 / 2e-43 O-fucosyltransferase family protein (.1) AT4G16650 164 / 2e-43 O-fucosyltransferase family protein (.1) AT1G76270 162 / 1e-42 O-fucosyltransferase family protein (.1) AT1G22460 157 / 1e-40 O-fucosyltransferase family protein (.1) AT1G11990 154 / 2e-39 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005094 [exp] 1265 / 0 AT3G30300 887 / 0.0 O-fucosyltransferase family protein (.1) Lus10010654 [exp] 558 / 0 AT3G03810 840 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10013612 [exp] 555 / 0 AT3G03810 843 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10028957 [exp] 174 / 1e-46 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 174 / 2e-46 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 169 / 1e-44 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 168 / 1e-44 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 167 / 2e-44 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10037830 [exp] 167 / 2e-44 AT1G04910 851 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G113200 [exp] 994 / 0 AT3G30300 886 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101600 [exp] 992 / 0 AT3G30300 917 / 0.0 O-fucosyltransferase family protein (.1) Potri.013G056200 [exp] 593 / 0 AT3G03810 845 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.019G036600 [exp] 580 / 0 AT3G03810 885 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 171 / 1e-45 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 170 / 3e-45 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 169 / 3e-45 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 169 / 5e-45 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 169 / 9e-45 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G316800 [exp] 165 / 6e-44 AT1G04910 847 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10034356 pacid=23176052 polypeptide=Lus10034356 locus=Lus10034356.g ID=Lus10034356.BGIv1.0 annot-version=v1.0 ATGAAGGGAGAAGGCAATAATAGCAGTAAGGCGATAGTAATGAAGTCCAAGCTCAAATGGGTGGGCTTAGTTGGCCTCATCCTTTCAGCTCTCTCTCTAT TTGTCCATTTCCTTCTCGCCAGATTCTCCGACCAAGGCGCCTCCGATTACTACAACACTTCCATCACCATCTTCTCTTGGCGACCCGTCTTCGAGCTTCC CCACTTACCCCAATCATCAATAGTACAGGGACCATTGTACAGGAGGCTTTGGGGTCCGGTTAGGCGGCTTGAATCTTTGCATCCATATGCCAATCCCAGA GGACCATACCCAGATCCCAGATCGGAATCAAGTGGGTATATCTTTGTCAGGATTCAAGGTGGTTTCCACGACATTAGGAGTTCGATAGCTGATGTGGTTG TGGTTGCTCGCCTTCTGAATGCAACTTTAGTAATTCCAGAGATTCAATCAACTACAAGCAGCAAAGGGATTAGCTCAGAGTTTAAGAGTTTTGCATATGT TTACAATGAGGACCAATTCATGGCAGCACTGGTAAAAGATGTGAGAGTTGTGAAAACGCTTCCCAAAAGTCTTAAAAGTGCAAGGAGAAGGAAGACTATC CCCTCATTCCGAGTGCCTCGATCAGCTTCTCCGTATTACTATTTGCATCATGTTCTGCCAGTGCTCAATAAGCATTCAGTGGCTGAAATCGTCATATCTG ATGGCGGGTGTTTGCAGCCTATCCTTCCAAGCCATCTTGAAGAATATCAGAGGTTGAGATGTAGAGTAGCTTTCCATGCTTTGGTGGTCCGACAAGAGGT TCAGGAGCTTACAACTAAAATCCTGCACAGACTGCAAGCTCCTCGAAGACCATTTATCGCTTATGATCCTGGGTTGACAAGAGAAGCTTTAGCATTCTAT GGTTGTGCAGAGCTTTTCCAGGATGTGCATAGTGAACTTATTCAACACAAGCGAGCCTGGATGCGAAGACGTGGCATTGTCAAGGGCAAACTTTCTGTTA ACTCTGCAGAACAACGCCTTAATGGTTCATGCCCATTAATGCCTGAAGAGGTTGGTATTCTTCTTCGAGCATATGGATATCCATGGGACACCATTATATA TGTTTCAGGCGGAGAAGTGTTTGGTGGCCAGAGGACATTAATTCCTCTGCATGCAATGTTCGAAAATGTGGTTGACAGGACTTCTCTAAGCGCAGCGTGG GAGCTAACTAGGATTTATGGCCGTGAGGTCGACCTTGATAGCAAATTCTCCAGGGCACCACCTTCTGTTGTACAAGAAAAGAAGACTGAGGCTTGGAAAA ATGTAGGACCTCGTCCTCGTCCCCTACCACCACCGCCAGCTCGCTTCAAATATCCACATAACATTGAAGGTTGGTGGGGATGGGTGGCCGAAAGTGACAA CGAACCTGAGAGCACCGTTATGGAGTTGAGAACCAATGCTCATAAACTTCTATGGGAGGCCGTAGACTACCTGGTTTCAGTTGAAGCTGATGTCTTTATC TCCGGATTTGATCGTGATGGGAAAGGGCACCCGAATTTGGGAAGCTTGGTCATGGGCCACAGGCTTTATCTCTCACCAGCCTCCAAAACCTTCCGTCCTG ACAGGAAGGAAGTTGTGAAGCTACTGGAAGAAAATCGGGAGCATCTATACGAAGCAAACCATACCTGGCTGGCATCTATCCGTCAGCATTTTAGAAGAAG TTTAATCGATGGTGCTTTGAATGCATCGGTCGCCTCAAAACCGTTATCCTTCCTTTCTCATCCTGTCCCTGAATGTTCTTGCTTGGGAACATCTGCACAT TCTGAGGTTGACTTGGGTGTCACGCAACGCTGCCCCAAGTGGATGAATGGCGAGACAAGCTCAAGATTAAAAGACAAGGAAACAGACGAGGAAGAGCTTG ACGATGATGATGCTTCGTCTTCTGGTATGTTTTTCAAGCATAGTAGCGGGAATAATGAGAGTGGTGGTGGAGAAATGAACAAAGAAGAAGCTCCGTTGGA GGATCAAGAAGAGTCGGAGGTTGCAGAGTAG
AA sequence Show only first row Show all	>Lus10034356 pacid=23176052 polypeptide=Lus10034356 locus=Lus10034356.g ID=Lus10034356.BGIv1.0 annot-version=v1.0 MKGEGNNSSKAIVMKSKLKWVGLVGLILSALSLFVHFLLARFSDQGASDYYNTSITIFSWRPVFELPHLPQSSIVQGPLYRRLWGPVRRLESLHPYANPR GPYPDPRSESSGYIFVRIQGGFHDIRSSIADVVVVARLLNATLVIPEIQSTTSSKGISSEFKSFAYVYNEDQFMAALVKDVRVVKTLPKSLKSARRRKTI PSFRVPRSASPYYYLHHVLPVLNKHSVAEIVISDGGCLQPILPSHLEEYQRLRCRVAFHALVVRQEVQELTTKILHRLQAPRRPFIAYDPGLTREALAFY GCAELFQDVHSELIQHKRAWMRRRGIVKGKLSVNSAEQRLNGSCPLMPEEVGILLRAYGYPWDTIIYVSGGEVFGGQRTLIPLHAMFENVVDRTSLSAAW ELTRIYGREVDLDSKFSRAPPSVVQEKKTEAWKNVGPRPRPLPPPPARFKYPHNIEGWWGWVAESDNEPESTVMELRTNAHKLLWEAVDYLVSVEADVFI SGFDRDGKGHPNLGSLVMGHRLYLSPASKTFRPDRKEVVKLLEENREHLYEANHTWLASIRQHFRRSLIDGALNASVASKPLSFLSHPVPECSCLGTSAH SEVDLGVTQRCPKWMNGETSSRLKDKETDEEELDDDDASSSGMFFKHSSGNNESGGGEMNKEEAPLEDQEESEVAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30300			O-fucosyltransferase family pr...		Lus10034356 [exp]	0	1
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10029779 [exp]	3.2	0.8610
AT5G05240			Uncharacterised conserved prot...		Lus10034236 [exp]	5.7	0.8762
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10042409 [exp]	6.0	0.8676
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10018892 [exp]	9.5	0.8257
AT4G19010			AMP-dependent synthetase and l...		Lus10016630 [exp]	10.0	0.8556
AT3G53320			unknown protein		Lus10026478 [exp]	13.0	0.8202
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10037788 [exp]	14.4	0.8614
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10030045 [exp]	21.5	0.8570
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10017774 [exp]	22.1	0.8487
AT5G09580			unknown protein		Lus10007099 [exp]	24.2	0.8238

Compare expression of checked genes

Lus10034356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.