Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69010 168 / 1e-49 bHLH bHLH102, BIM2 BES1-interacting Myc-like protein 2 (.1) AT5G38860 144 / 1e-40 bHLH bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1) AT5G08130 142 / 1e-38 bHLH BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G24260 59 / 2e-09 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 56 / 1e-08 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G46510 56 / 3e-08 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G16430 55 / 4e-08 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G58010 53 / 1e-07 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G00050 52 / 3e-07 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 50 / 5e-07 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005091 [exp] 491 / 6e-174 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10026684 [exp] 162 / 3e-47 AT1G69010 276 / 6e-92 BES1-interacting Myc-like protein 2 (.1) Lus10007974 [exp] 155 / 8e-43 AT5G08130 330 / 1e-106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013502 [exp] 154 / 2e-42 AT5G08130 330 / 6e-107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10004630 [exp] 149 / 4e-42 AT1G69010 257 / 2e-84 BES1-interacting Myc-like protein 2 (.1) Lus10024811 [exp] 56 / 2e-08 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021846 [exp] 54 / 5e-08 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10000037 [exp] 53 / 5e-08 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10009261 [exp] 54 / 7e-08 AT4G36930 102 / 7e-24 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G112900 [exp] 293 / 5e-98 AT1G69010 186 / 1e-56 BES1-interacting Myc-like protein 2 (.1) Potri.017G101700 [exp] 279 / 1e-92 AT1G69010 184 / 5e-56 BES1-interacting Myc-like protein 2 (.1) Potri.012G065000 [exp] 186 / 3e-54 AT5G08130 352 / 7e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.015G048000 [exp] 182 / 2e-52 AT5G08130 359 / 3e-117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.008G112000 [exp] 173 / 3e-51 AT1G69010 292 / 4e-98 BES1-interacting Myc-like protein 2 (.1) Potri.010G137600 [exp] 168 / 1e-49 AT1G69010 325 / 4e-111 BES1-interacting Myc-like protein 2 (.1) Potri.005G207200 [exp] 58 / 4e-09 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2) Potri.006G186600 [exp] 55 / 3e-08 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.018G109500 [exp] 55 / 3e-08 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.005G001800 [exp] 55 / 5e-08 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10034358 pacid=23175869 polypeptide=Lus10034358 locus=Lus10034358.g ID=Lus10034358.BGIv1.0 annot-version=v1.0 ATGACCAAGTCCGTCAAGTCTCACGCAGAGGAAGATTATGATGCTGATGATTGTGATTCTCCTTCTTCAAGAGGCGAAGTGGTGAAAAATGATGGCAAGA CTACTGACCAGAAAGGCAATACCTACAGGTCGAAGCATTCCGAGACAGAACAAAGGAGAAGGTGCAAGATCAACGAGAGATTTCAGATCCTTAGAGAACT CATACCTCAGAATGATCAGAAGAGAGACAAGGCTTCCTTATTGTTAGAGGTTATAGGCTACATACAGTTTTTACAGGAAAGATTACAGGTGTATGAGGGA TCTTACCATGGTTGGACTCAAGAACAATTGCTCCCATGGAAAAATCACGACACTTCAGAAAATCTAGTGGACAATTCTCAAATTTTGAAGAATTGCTCTG CTCATGACGGTACTGCAGGACTTGCAAATGTCCGAAGATTGATAGACTCCAATATGGAATCTTCTACAGTATGCAAAGAATTGGATCATACCCCTGGAGT ACTGCCATCTGTTCAATGTAGTATGCAATCAGGCTCGAGTATGATTGATGCAATTGGAAGGGCTATTAGCCTGCCTACACAGGGTTTGCAAGGTTCTGTT TCAGGTGCGGCAAACTTGGCCCATCAAATTCACCCTGAAGTGTGGCAAAGTCAGCCATGTATTACTGCGTGTACAAAACCAAGCCGTGGAGTGAATGCTC AAGCGCTAACAAGAGGGCATGAATCTGCTAGTATCTCCAATGATTATTCTCGAGGGGTTCTGAGCAGTCTGGCCCAAGCACTGGAGTCATCTGGTGTGGA TTTGTCCGACACTAGCATCTCAGTCAATATTGATGTTGGCAAAAGAGCAAAGCATGGAGCTACTGGTTTACAGTTATCGCCTCCTAAGGATCAGGATGAG CAGCAAACCCGCCATCTGAACAATCAAGTGATGGAACAAACTGGATATGGGAGCATTGCACAAGAGTATGATCAACACACCTGTAAGAGACTTCGAACAG AAAAACTCTGA
AA sequence Show only first row Show all	>Lus10034358 pacid=23175869 polypeptide=Lus10034358 locus=Lus10034358.g ID=Lus10034358.BGIv1.0 annot-version=v1.0 MTKSVKSHAEEDYDADDCDSPSSRGEVVKNDGKTTDQKGNTYRSKHSETEQRRRCKINERFQILRELIPQNDQKRDKASLLLEVIGYIQFLQERLQVYEG SYHGWTQEQLLPWKNHDTSENLVDNSQILKNCSAHDGTAGLANVRRLIDSNMESSTVCKELDHTPGVLPSVQCSMQSGSSMIDAIGRAISLPTQGLQGSV SGAANLAHQIHPEVWQSQPCITACTKPSRGVNAQALTRGHESASISNDYSRGVLSSLAQALESSGVDLSDTSISVNIDVGKRAKHGATGLQLSPPKDQDE QQTRHLNNQVMEQTGYGSIAQEYDQHTCKRLRTEKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10034358 [exp]	0	1
AT5G10320			unknown protein		Lus10000634 [exp]	5.9	0.8163
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	6.0	0.8380
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	6.0	0.8389
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	6.9	0.8225
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	7.4	0.8213
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	10.1	0.8281
AT1G05785			Got1/Sft2-like vescicle transp...		Lus10019570 [exp]	16.2	0.7666
AT1G72590			3-oxo-5-alpha-steroid 4-dehydr...		Lus10018059 [exp]	16.7	0.6904
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	19.7	0.7959
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	21.0	0.8054

Compare expression of checked genes

Lus10034358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.