Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15093 362 / 3e-127 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135300 [exp] 424 / 5e-152 AT4G15093 358 / 1e-125 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1) Potri.T045400 [exp] 422 / 7e-151 AT4G15093 338 / 1e-117 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1) Potri.004G135200 [exp] 420 / 3e-150 AT4G15093 343 / 8e-120 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1) Potri.018G136800 [exp] 419 / 1e-149 AT4G15093 335 / 3e-116 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1) Potri.T034182 [exp] 112 / 1e-31 AT4G15093 102 / 3e-28 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1) Potri.018G145550 [exp] 90 / 9e-23 AT4G15093 82 / 3e-20 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1) Potri.018G136303 [exp] 52 / 8e-09 AT4G15093 44 / 2e-06 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0283 [flax] [poplar] LigB PF02900 [flax] [poplar] LigB Catalytic LigB subunit of aromatic ring-opening dioxygenase
Representative CDS sequence Show only first row Show all	>Lus10034361 pacid=23175851 polypeptide=Lus10034361 locus=Lus10034361.g ID=Lus10034361.BGIv1.0 annot-version=v1.0 ATGGCTGCTATACCTGAAACGTTTTTCATTTCGCACGGCTCCCCAACGCTGTCAATCGACGACTCCTTGCCGGCGAGACATTTCTTGAAGTCCTGGGAGC AGAAGATATACACCAAGGACAAACCTAAGTCAATCCTCATTATCTCCGGCCACTGGGACACCAAAGTCCCCGCCGTCAACGTCGTCGATCGCAACGATAC CATTCACGACTTCTATGGCTTCCCCAAACAGATGTATCAGATAAAGTACACGCCTCCAGGAGCACCCGCATTGGCAAAGAAGGTGAAGGAGCTGCTAATG GCATCCGGCTTCGATGAAGTTGTGGAAGACAAGAAAAGAGGAGTGGATCATGGAGCATGGGTGCCTCTGATGCTCATGTATCCAGATGCTGATATTCCCG TCTGTCAACTATCTGTCCAGTCTGACAAAGATGGAACCTATCATTACAACATGGGGAAGGCATTAGCTCCACTGAGACAAGAAGGTGTTCTTATCATTGG CTCTGGATCTGCTACTCATAATTTGAGAGCTATGGGTCGCTCCGATAGCTCGGTTGCTCCCTGGGCTCTCGAATTCGATACTTGGCTCAAGGACTCCCTC GTTGAAGGAAGATATGAAGATGTGAATCACTATGAGCAGAAAGCACCACATGGAAAGAAGGCTCATCCATGGCCTGACCATTTTTTCCCTCTTCATGTTG CTATGGGTGCTGCTGGTGATGATTCAAAGGCCAAACTTCTTCACCATAGCTGGACTCATGGCACTCTCTCTTATGCGTCTTACCAGTTTACTGCTCCCCA GTAA
AA sequence Show only first row Show all	>Lus10034361 pacid=23175851 polypeptide=Lus10034361 locus=Lus10034361.g ID=Lus10034361.BGIv1.0 annot-version=v1.0 MAAIPETFFISHGSPTLSIDDSLPARHFLKSWEQKIYTKDKPKSILIISGHWDTKVPAVNVVDRNDTIHDFYGFPKQMYQIKYTPPGAPALAKKVKELLM ASGFDEVVEDKKRGVDHGAWVPLMLMYPDADIPVCQLSVQSDKDGTYHYNMGKALAPLRQEGVLIIGSGSATHNLRAMGRSDSSVAPWALEFDTWLKDSL VEGRYEDVNHYEQKAPHGKKAHPWPDHFFPLHVAMGAAGDDSKAKLLHHSWTHGTLSYASYQFTAPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	0	1
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	1.4	0.9817
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040765 [exp]	1.4	0.9800
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	3.0	0.9777
AT2G18890			Protein kinase superfamily pro...		Lus10025468 [exp]	3.5	0.9730
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019832 [exp]	4.0	0.9772
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10006742 [exp]	5.0	0.9684
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	5.0	0.9764
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10040116 [exp]	5.3	0.9753
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	5.5	0.9726
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10016427 [exp]	5.7	0.9751

Compare expression of checked genes

Lus10034361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.