Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47710 275 / 7e-90 Serine protease inhibitor (SERPIN) family protein (.1) AT2G25240 259 / 7e-84 Serine protease inhibitor (SERPIN) family protein (.1) AT3G45220 245 / 2e-78 Serine protease inhibitor (SERPIN) family protein (.1) AT2G26390 241 / 1e-76 Serine protease inhibitor (SERPIN) family protein (.1) AT1G62170 205 / 2e-62 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) AT2G35580 202 / 8e-62 Serine protease inhibitor (SERPIN) family protein (.1) AT1G64030 184 / 9e-55 ATSRP3 serpin 3 (.1) AT2G14540 181 / 2e-53 ATSRP2 serpin 2 (.1) AT1G64010 119 / 3e-32 Serine protease inhibitor (SERPIN) family protein (.1) AT1G63280 98 / 4e-25 Serine protease inhibitor (SERPIN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005089 [exp] 633 / 0 AT1G47710 306 / 2e-101 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034364 [exp] 347 / 1e-117 AT1G47710 296 / 4e-97 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032754 [exp] 305 / 9e-102 AT1G47710 487 / 1e-172 Serine protease inhibitor (SERPIN) family protein (.1) Lus10002792 [exp] 303 / 7e-101 AT1G47710 495 / 6e-176 Serine protease inhibitor (SERPIN) family protein (.1) Lus10019009 [exp] 181 / 1e-53 AT1G47710 209 / 9e-64 Serine protease inhibitor (SERPIN) family protein (.1) Lus10040926 [exp] 114 / 6e-30 AT1G47710 115 / 2e-30 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032600 [exp] 88 / 7e-20 AT1G47710 99 / 6e-24 Serine protease inhibitor (SERPIN) family protein (.1) Lus10023541 [exp] 86 / 4e-19 AT1G62170 120 / 1e-31 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) Lus10039336 [exp] 76 / 4e-15 AT2G26390 105 / 2e-25 Serine protease inhibitor (SERPIN) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100900 [exp] 339 / 4e-115 AT1G47710 337 / 2e-113 Serine protease inhibitor (SERPIN) family protein (.1) Potri.014G036000 [exp] 267 / 4e-87 AT1G47710 476 / 1e-168 Serine protease inhibitor (SERPIN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00079 [flax] [poplar] Serpin Serpin (serine protease inhibitor)
Representative CDS sequence Show only first row Show all	>Lus10034362 pacid=23175845 polypeptide=Lus10034362 locus=Lus10034362.g ID=Lus10034362.BGIv1.0 annot-version=v1.0 ATGTTAAGCTTGATCGCTTTGGGATCCGAGGGTCCTACTCTCAATCAGCTGCTTTCTTTCCTAGATATAAAGGGCGTCAACGAGCTCAACTTCTTGGCCT CCACACCTCTGTCGTTCATCAATGGCGCTTGGTTGGACCAACGTTTCAAGCTGAAGCCTTCTTTTGTGGAAGTTGTGAGAAATGTTTATCATGCTACTGC AAGTGAGGTTGACTTCCTCCACAAGTTTGACCAAGTAAGAGAAGAAATCAATTCATGGGCAGAGAGGGAAACCAGAGGACTTATAAGAAACCTCTTACCA GAAGATGGTCTAGATGAAGAGACAGTTCTGGTACTTGCAAATGCACTCTACTTCAAGGGAATATGGGACAGGCCATTCGATGCGTCCAAGACAGAGCACA AAAACTTCAACCTCCTCGATGGCGAAACTGTTCAAGTCCCTTTCATGACAACCAATCCCACTCAGAAGCATTTTTACGCATCATCAATCGATCATCAGGT TCTGAAGGTTCCATATCGGCCAGGACATGATTCCAGGAGGAGGTTCTCCATGTGCTTCTTTCTTCCTACTGCAAGAGATGGGTTAGCAGGCTTAGTAGAG CGAATTAGAAATGATCCCACGATGCTGAATAATAATGAACATGTTGCAGAACAGTTGTTGCAGGAAAGGAATGTGTACCCTGTTTTGATTCCACGGTTCA AGCTGTCTTTTGAGGTTGAAGCTTCAAGTACACTAAGGGAAATGGGAGTGGATTTACCTTTCAGCGATATGTACGGGCTAATGGCAATGGTGGAGTCGAG CGAACCAGTTGTGCTGTCGAAGATGTTCCATAAGTCGCTGATTGAAGTGAACGAGGAAGGAACGGAAGCTTCTTCCGGTAGTGCTGGAAGGATTAGAGGT ATGCGTTGCAGGTCGGCTGGACCTCCGAGTTTCGTCGCTGACCATCCTTTCCTTTTCAAAATCATGGAAGAGAATTCTGGGTCCGTCTTGTTTATGGGAG CTATTCTCAATCCACTGTTAGTTTCTTGA
AA sequence Show only first row Show all	>Lus10034362 pacid=23175845 polypeptide=Lus10034362 locus=Lus10034362.g ID=Lus10034362.BGIv1.0 annot-version=v1.0 MLSLIALGSEGPTLNQLLSFLDIKGVNELNFLASTPLSFINGAWLDQRFKLKPSFVEVVRNVYHATASEVDFLHKFDQVREEINSWAERETRGLIRNLLP EDGLDEETVLVLANALYFKGIWDRPFDASKTEHKNFNLLDGETVQVPFMTTNPTQKHFYASSIDHQVLKVPYRPGHDSRRRFSMCFFLPTARDGLAGLVE RIRNDPTMLNNNEHVAEQLLQERNVYPVLIPRFKLSFEVEASSTLREMGVDLPFSDMYGLMAMVESSEPVVLSKMFHKSLIEVNEEGTEASSGSAGRIRG MRCRSAGPPSFVADHPFLFKIMEENSGSVLFMGAILNPLLVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47710			Serine protease inhibitor (SER...		Lus10034362 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	2.0	0.8690
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032037 [exp]	5.0	0.8811
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	12.2	0.8525
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	12.5	0.8689
					Lus10007802 [exp]	13.2	0.8683
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	15.4	0.8685
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	15.7	0.8410
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10016282 [exp]	17.6	0.8223
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	17.9	0.8598
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	19.1	0.8260

Compare expression of checked genes

Lus10034362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.