Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47710 268 / 5e-86 Serine protease inhibitor (SERPIN) family protein (.1) AT2G25240 243 / 1e-76 Serine protease inhibitor (SERPIN) family protein (.1) AT2G26390 240 / 3e-75 Serine protease inhibitor (SERPIN) family protein (.1) AT3G45220 234 / 7e-73 Serine protease inhibitor (SERPIN) family protein (.1) AT1G62170 195 / 1e-57 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) AT1G64030 187 / 5e-55 ATSRP3 serpin 3 (.1) AT2G14540 187 / 9e-55 ATSRP2 serpin 2 (.1) AT2G35580 181 / 6e-53 Serine protease inhibitor (SERPIN) family protein (.1) AT1G64010 101 / 4e-25 Serine protease inhibitor (SERPIN) family protein (.1) AT1G63280 96 / 1e-23 Serine protease inhibitor (SERPIN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005089 [exp] 352 / 9e-119 AT1G47710 306 / 2e-101 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034362 [exp] 325 / 6e-109 AT1G47710 274 / 1e-89 Serine protease inhibitor (SERPIN) family protein (.1) Lus10002792 [exp] 280 / 9e-91 AT1G47710 495 / 6e-176 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032754 [exp] 274 / 3e-88 AT1G47710 487 / 1e-172 Serine protease inhibitor (SERPIN) family protein (.1) Lus10005087 [exp] 185 / 4e-56 AT2G26390 44 / 6e-10 Serine protease inhibitor (SERPIN) family protein (.1) Lus10019009 [exp] 176 / 9e-51 AT1G47710 209 / 9e-64 Serine protease inhibitor (SERPIN) family protein (.1) Lus10040926 [exp] 122 / 3e-32 AT1G47710 115 / 2e-30 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032600 [exp] 100 / 1e-23 AT1G47710 99 / 6e-24 Serine protease inhibitor (SERPIN) family protein (.1) Lus10023541 [exp] 91 / 1e-20 AT1G62170 120 / 1e-31 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100900 [exp] 392 / 2e-134 AT1G47710 337 / 2e-113 Serine protease inhibitor (SERPIN) family protein (.1) Potri.014G036000 [exp] 274 / 1e-88 AT1G47710 476 / 1e-168 Serine protease inhibitor (SERPIN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00079 [flax] [poplar] Serpin Serpin (serine protease inhibitor)
Representative CDS sequence Show only first row Show all	>Lus10034364 pacid=23175949 polypeptide=Lus10034364 locus=Lus10034364.g ID=Lus10034364.BGIv1.0 annot-version=v1.0 ATGGAGGAGCAACAAACAGATGGACAGAAGAAGCTCATCAATAGCTGCTGCAACACTACATTCTCTTTGGATATGGCACTCCATATCCTCCTTACAGAAG CAGCCTGCAGTAAAGCATCAAACTTTGTCTTATCCCCTTTCTCAATCCACTCTATGCTCAGCCTGATTGCAGTGGGGGCAAAAGAGTCTACACTGGAACA CCTTCTCCCGATTCTGGGTTCTAATAGCTTGGAAGAACTCAATTCTCTAACCTCACAGATAAATTTCCTCCCCTCTAGTATCGCCAGCCCCATCGTTTCA TTCCTCAACACTGCATGGGTCGATCAAAAGTTCAAGCTTAAGCCTGCATTTCAGAAAGTCGCCTCAGAAATTTACAGCTCCACTGCCAAACAAGTGGATT TCACCAGCAACGCAAAAGAAGTAGCGGATTCGATCAATTCGTGGGCGAATCAAGCCACTAAAGGACTCATCAAAACCCTCTTACCTGAAGGAAGCCTGAA AGAAGATACGACTCTGGTGCTAGCAAACGCACTCTACTTCAAGGGACAATGGGACAGGAAATTCGACCTGTCCAGAACACAAATAAAAAACTTTCACCTC CTCAACTCTGAAGAAACCGTAGCAATCCCGTTCATGACCACCAAGCCAAGCCACAAGCATCTCTACAAGTCCTTCGACGGGTACAAAGTCCTCAAAATCC CCTATCAAAACCCTAAAGACAAAGAAGGCACAGAAACGATCCGATTTGCGATGAATTTCTTCCTCCCCGATGCAAAAGATGGCCTGGCGGATCTTGTAAA TAGAATCAGAACCAATCCAGCGATGTTGAGCAACCACTCCGATGAGTTACTACTACAGGAGGAGAATCTGCGACCGCTTTGGATTCCGAGGTTCAAGTTC TCGTTCGAGATGGAAGCTTCGGAGACGCTGAAGGAATTGGGATTGGGAATGGTTATGAATCAGGGGGAGCTCAGGGAGATGGTGGATTGTTGTAGCGCGG AGTCGTCGGTGGCGGTGTCGAAGATTTTCCACAAAGCGTGTATCGAAGTGAACGAGGAAGGGACGGAAGCTGCGGCGACAACTGCCCCGAGATTTGTGAG GAAAGCAAGAAGGGTGAACCCTCCAAGCTTTGTAGCTGACCATGCTTTCGTGTTCACGGTGGTGGAAGAGAGGTCTGGGATCGTGTTGTTCGTTGGTGCT GTGGTTAATCCTCTGCTTGCTGAAGGGGAAGAAGGGTGTAGCCGCAAATTGGCAGCTGGAGAGCCAAGTACAATAAAGAAGCCACGGAACCAGTAA
AA sequence Show only first row Show all	>Lus10034364 pacid=23175949 polypeptide=Lus10034364 locus=Lus10034364.g ID=Lus10034364.BGIv1.0 annot-version=v1.0 MEEQQTDGQKKLINSCCNTTFSLDMALHILLTEAACSKASNFVLSPFSIHSMLSLIAVGAKESTLEHLLPILGSNSLEELNSLTSQINFLPSSIASPIVS FLNTAWVDQKFKLKPAFQKVASEIYSSTAKQVDFTSNAKEVADSINSWANQATKGLIKTLLPEGSLKEDTTLVLANALYFKGQWDRKFDLSRTQIKNFHL LNSEETVAIPFMTTKPSHKHLYKSFDGYKVLKIPYQNPKDKEGTETIRFAMNFFLPDAKDGLADLVNRIRTNPAMLSNHSDELLLQEENLRPLWIPRFKF SFEMEASETLKELGLGMVMNQGELREMVDCCSAESSVAVSKIFHKACIEVNEEGTEAAATTAPRFVRKARRVNPPSFVADHAFVFTVVEERSGIVLFVGA VVNPLLAEGEEGCSRKLAAGEPSTIKKPRNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	0	1
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	2.2	0.8834
AT1G18010			Major facilitator superfamily ...		Lus10019528 [exp]	3.7	0.8265
					Lus10032433 [exp]	4.6	0.8602
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	4.9	0.8787
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	6.3	0.8556
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	6.3	0.8445
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10004091 [exp]	7.0	0.7569
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	8.4	0.8428
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	9.9	0.8360
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	11.5	0.8329

Compare expression of checked genes

Lus10034364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.