Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15780 128 / 2e-33 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G08685 49 / 7e-07 SAH7 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G13140 48 / 5e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT1G78040 46 / 9e-06 Pollen Ole e 1 allergen and extensin family protein (.1.2) AT1G29140 44 / 3e-05 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G45880 44 / 3e-05 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G10130 43 / 9e-05 Pollen Ole e 1 allergen and extensin family protein (.1) AT3G26960 41 / 0.0004 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G18596 40 / 0.0005 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005086 [exp] 340 / 3e-115 AT5G15780 133 / 5e-35 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10035252 [exp] 89 / 2e-20 ND 38 / 0.005 Lus10035187 [exp] 52 / 6e-08 AT5G41050 159 / 3e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10032018 [exp] 52 / 9e-08 AT5G41050 162 / 2e-51 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10040948 [exp] 50 / 5e-07 AT5G05500 176 / 9e-57 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10041707 [exp] 49 / 7e-07 AT5G10130 150 / 9e-47 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10009837 [exp] 48 / 2e-06 AT5G05500 171 / 1e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10026040 [exp] 48 / 2e-06 AT5G10130 159 / 3e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10014332 [exp] 46 / 7e-06 AT5G10130 154 / 2e-48 Pollen Ole e 1 allergen and extensin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G114300 [exp] 154 / 3e-43 AT5G15780 178 / 5e-52 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.017G100600 [exp] 145 / 1e-39 AT5G15780 173 / 1e-49 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.003G167100 [exp] 59 / 9e-10 AT5G13140 180 / 2e-55 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.001G326200 [exp] 52 / 7e-08 AT5G41050 158 / 9e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.007G090100 [exp] 51 / 1e-07 AT4G08685 152 / 1e-47 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.005G078200 [exp] 49 / 8e-07 AT4G08685 165 / 5e-53 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.017G068400 [exp] 49 / 1e-06 AT5G41050 172 / 3e-55 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.006G119100 [exp] 48 / 2e-06 AT3G09925 180 / 7e-58 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.010G185400 [exp] 48 / 2e-06 AT5G05500 166 / 8e-53 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.001G060500 [exp] 48 / 5e-06 AT5G13140 185 / 3e-57 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10034365 pacid=23175889 polypeptide=Lus10034365 locus=Lus10034365.g ID=Lus10034365.BGIv1.0 annot-version=v1.0 ATGGGTTGCTTCTCCATATTCGCAGTCCTCTGCCTTCTAAGCTTCACCTTCGCAGGAGCAAAGCACGAAGCTACTGCTGCGAACAAGAACTATGCAGCTA TCGTTGTTGGCACCGTCTACTGCGACACCTGCTTCCAGGATGCGGGCACCCGCTTCATTTCTGGAGCATCTGTTGCAGTAGAATGCAGACGCGGCAGATT CCGACAAGAAGTGAAGACAAACGAGCAAGGGAAGTTCAAAGTGAAGTTACCATTCTCAGTGAGCAAACAAGTCCAAAGCATCAGGAGATGTTCAGTGAAG TTAGTGAGCAGCAGCGATCCCTCCTGTGCAGTTACATCCACAGCGAATTCGACATCATCCCTCCACCGCATCAACAAGCAAGGAGACGATCTCCATGTCT TCTCTGCTGGAATCTTCACTTTCAAACCTGCACAACACGAAAACAGCCTCTGTTCACAAAAGGACCTTTCAGCACTTCCTACACAACCATCTCCAGACAT GAAGCAGAACCATTTTATGTCTCTGCTACCAAAGCTTCCACCTTTACCTCAACTCCCTCCTCTCCCTGCTCTCCCTAGTCTCCCAAGGATGCCCTTCTTT CCTCCTTGGTCTGGAAAAACCAAGCAGGCTGCTTCTGGGAAACCCACTTTCAGAAAAGGACCAGGAAATGATGATAATAATAATAATGATGATGATGATC AACTGTCTAATCAGAAATCAAGACAACAACAACGTCATCAAACTACCCAGCCTCAGGGTTTCCTCCCAATGCCACCAATTCTTCCACCAATTCCCTTTAT CCCATCTCCTCCGTTGATACCAAACCCTTTCCAGCCACCGCCTTCAGTGCTGCCGCCAATTTTTCCAACACCTCCGCCTTCGTTGTTCCCTCCAATTTTT CCGACACCTCCGCCGGCACCTTGGCTTCCCATTCCGCCAATTCCGAGCCTGTTTACTCCTCCACCACCGCCGCCGCCGCCGCCGCCGCCGCCTCCATTCC ACTTTCCTCCTATTCCGCCTCTGCTCCCTTTCCCGCCGGGCTTCCCTGGAGGCCCACCTCGTAGTGGTTCTCATAAATCCGGCCCATGA
AA sequence Show only first row Show all	>Lus10034365 pacid=23175889 polypeptide=Lus10034365 locus=Lus10034365.g ID=Lus10034365.BGIv1.0 annot-version=v1.0 MGCFSIFAVLCLLSFTFAGAKHEATAANKNYAAIVVGTVYCDTCFQDAGTRFISGASVAVECRRGRFRQEVKTNEQGKFKVKLPFSVSKQVQSIRRCSVK LVSSSDPSCAVTSTANSTSSLHRINKQGDDLHVFSAGIFTFKPAQHENSLCSQKDLSALPTQPSPDMKQNHFMSLLPKLPPLPQLPPLPALPSLPRMPFF PPWSGKTKQAASGKPTFRKGPGNDDNNNNDDDDQLSNQKSRQQQRHQTTQPQGFLPMPPILPPIPFIPSPPLIPNPFQPPPSVLPPIFPTPPPSLFPPIF PTPPPAPWLPIPPIPSLFTPPPPPPPPPPPPPFHFPPIPPLLPFPPGFPGGPPRSGSHKSGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10034365 [exp]	0	1
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10011234 [exp]	3.5	0.7886
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	4.0	0.8098
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	6.5	0.7855
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	8.6	0.8208
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	13.2	0.7320
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	15.9	0.7482
AT3G55550			Concanavalin A-like lectin pro...		Lus10040276 [exp]	17.2	0.7736
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10040222 [exp]	18.6	0.7591
AT5G49120			Protein of unknown function (D...		Lus10037493 [exp]	21.5	0.7810
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	22.4	0.7531

Compare expression of checked genes

Lus10034365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.