Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38880 1054 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005085 [exp] 1369 / 0 AT5G38880 1081 / 0.0 unknown protein Lus10035251 [exp] 370 / 2e-121 AT5G38880 256 / 3e-78 unknown protein Lus10034622 [exp] 357 / 3e-114 AT5G38880 301 / 4e-93 unknown protein Lus10035250 [exp] 144 / 2e-40 AT5G38880 131 / 1e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100300 [exp] 1170 / 0 AT5G38880 1120 / 0.0 unknown protein Potri.004G114600 [exp] 1144 / 0 AT5G38880 1110 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034366 pacid=23175872 polypeptide=Lus10034366 locus=Lus10034366.g ID=Lus10034366.BGIv1.0 annot-version=v1.0 ATGGCCCAACCAGATGCCATACTGGAATGGCTTCACAAGGAGATGGGGTACAGGCCCCTGGGTCCTTACACTACTTCAACCAACAAGTCCCAGCTTCCTT CCGTCGATGCGCTCCGGAAGATTTGCCGTGGCAACATGATTCCGGTTTGGAGTTTCTTGATCAATAGAGTGAAATCAGAGAAGACGGTGGAGAGTATAAG GAAGAACATCACTGTACACGGTGTTGACGGTGGTGATGGTCGTCGTCGTCGTGCTGAGCGTGGGAGTAAAGATGACGGAGGGCGGAGTAAAGGAGGTGGG AGGAGGAAGGAGAAGGCAGCTGGTGGGGAGGTATCTTGTGCGGCCGAGAGTAGGGATTCGGCTTTGCAAGAAAGGGAATTGGTTGCGAAGGAGGGCGAGA GGTTGAGGAACATTGTTGGGCGGCAGAGGAAGGATCTCAAAGCTAGAATGTTGGAAGTCTCTAGGGAAGAGGCCGAGAGAAAGAGAATGATCGACGAACG TTCTAAAAACAGGCATAAGCAGGTGATGTTGGAATCCTATGATCAGCAGTGTGATGAAGCAGCAAAAATATTTGCTGAATATCACAAGCGTCTTTGTTCC TATGTTAATCAAGCGAGAGATGCTCAAAAGTCGAGTGCTGACTCTTTGACGGAAGTGGTTAGCACCACTAGTGCAAACAGTGAGAAGGAATCGGTTTATT CAACTGTTAAGGGTGCTAGATCTGCTGATGATGTCATTCTTATTGAAACAGCTCACGAGAGAAATATCAGAAAGGCATGTGAATATCTTGCAGCCCATAT GATAGAGAGAATACGTGTATCTTTTCCTGCATATGAAGGAAGTGGTATTCATTCAAGTCCTCAACTAGAAGCTGCAAAACTGGGTATCGATTTGGACGGG GAAGTACCTGATGAAGTTAGAACTATCATTGTGCATTGTCTGAAGAATCCTCCTCAATTACTCAACATAATCACTTCATACACATTGCGACTGAAATCAT TAGTTTCTAGAGAAATTGAGAAAATTGATGTCAGAGCTGATGCAGAAACTTTAAGATACAAGTTTGAGAACAACAGAGTACTGGAGGCTTCTTCTCCTGA TGTTAGCTCTCCACTACATTATCAACTGCATGGAAATGGAAAGATTGGAACAGATATTCCTTCTGGAGGAACTCAATATCAGCTCCTAGAAAGACAGAAG GCTCATGTTCAGCAATTTCTGGCTACTGAAGATTCACTTAACAAAGCTGCAGAGGCTAGGGACTTGTCTCAGAAGCTTATACAGCGGTTGCATGGGAGTG GCAATTCAGTTTCTTCACATGCACTTAATGTTACTGGTGCATCTAAAAACATGGACAGTATCCGTCATTTTGAGTTGGAGGTATGGGCCAAAGAAAGAGA GCTGGCAGGGTTGAGAGCAAGTTTGAACACACTGATGTCTGAAATTGAACGCTTGAATAAGCTTTGTGCGGAGAGGAAAGAAGCTGAAGATTCTTTGAGA AAGAAGTGGAAAAAGATTGAAGAGTTTGATGCACGGAGATCTGAACTCGAAACTCTTTACACTGCTCTATTGAAGGCCAACCGGGATGCAGCGACATTTT GGAATCAGCAGCCATTTGCTGCAAGTGAGTATGCATCAACTACTATAATCCCAGCATGCTCAGTTGTTTTGAGCATTGCAAACAATGCAAGAGATCTTAT TGATAACGAGTTTAAGGCTTTCTCTAGGAGCCCTGATAATAGCCTATATATGCTGCCTTCTACACCACAGGCACTTTTGGAATCAATGGGATCAACAGGA TCTACAGGCTCTGACGCTGCTGCTGCTACTGAAAAGAATGCTGCTCTACTGACAGCAAGAGCTGGTGCTAGAGATCCATCAGCAATTCCATCCATATGCC GGATTTCTGCTGCTCTTCAATATCCTGCTGGTTTGGAGGGTTCAGATGCTGGTTTAGCGTCAGTGTTGGAGTCCTTGGAGTTCTGTCTAAATCTACGTGG TTCAGAGGCTAGTATTCTGGAGGACTTGGCAAAGGCAATCAACATGGTTCACATACGGCAGAATCTTGTTGAAAGTGGCCACGCACTTTTGAACCATGCT TATCATGCTCAACAAGAATATGAAAGGACTACAAACTATTGCCTGAGTTTAGCTTCGGAGCAGGAGAGGATTGTGATGGAGAAGTGGCTTCCTGAGCTTA AAGCTGCAAGTTTGGCTTCAGAAGAATGCCTGAATGGTTGCAAATATGTTAGGGAATTGCTTAATGAATGGTGGGATCAACCAGCATCCACAGTGGTTGA TTGGGTTTATGTTGACGGACAAGACGTTGCTACTTGGATTAATCACGTCAAGCAACTGCTTACATTGTCGTGA
AA sequence Show only first row Show all	>Lus10034366 pacid=23175872 polypeptide=Lus10034366 locus=Lus10034366.g ID=Lus10034366.BGIv1.0 annot-version=v1.0 MAQPDAILEWLHKEMGYRPLGPYTTSTNKSQLPSVDALRKICRGNMIPVWSFLINRVKSEKTVESIRKNITVHGVDGGDGRRRRAERGSKDDGGRSKGGG RRKEKAAGGEVSCAAESRDSALQERELVAKEGERLRNIVGRQRKDLKARMLEVSREEAERKRMIDERSKNRHKQVMLESYDQQCDEAAKIFAEYHKRLCS YVNQARDAQKSSADSLTEVVSTTSANSEKESVYSTVKGARSADDVILIETAHERNIRKACEYLAAHMIERIRVSFPAYEGSGIHSSPQLEAAKLGIDLDG EVPDEVRTIIVHCLKNPPQLLNIITSYTLRLKSLVSREIEKIDVRADAETLRYKFENNRVLEASSPDVSSPLHYQLHGNGKIGTDIPSGGTQYQLLERQK AHVQQFLATEDSLNKAAEARDLSQKLIQRLHGSGNSVSSHALNVTGASKNMDSIRHFELEVWAKERELAGLRASLNTLMSEIERLNKLCAERKEAEDSLR KKWKKIEEFDARRSELETLYTALLKANRDAATFWNQQPFAASEYASTTIIPACSVVLSIANNARDLIDNEFKAFSRSPDNSLYMLPSTPQALLESMGSTG STGSDAAAATEKNAALLTARAGARDPSAIPSICRISAALQYPAGLEGSDAGLASVLESLEFCLNLRGSEASILEDLAKAINMVHIRQNLVESGHALLNHA YHAQQEYERTTNYCLSLASEQERIVMEKWLPELKAASLASEECLNGCKYVRELLNEWWDQPASTVVDWVYVDGQDVATWINHVKQLLTLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38880			unknown protein		Lus10034366 [exp]	0	1
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10043053 [exp]	2.4	0.8460
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Lus10036393 [exp]	3.9	0.8563
AT2G40980			Protein kinase superfamily pro...		Lus10015685 [exp]	5.7	0.8412
AT3G33530			Transducin family protein / WD...		Lus10038096 [exp]	6.5	0.8393
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Lus10035261 [exp]	10.2	0.7628
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	11.4	0.8408
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	15.0	0.8240
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	15.2	0.8356
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	15.4	0.8153
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10034172 [exp]	17.0	0.8278

Compare expression of checked genes

Lus10034366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.