Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38895 205 / 7e-67 RING/U-box superfamily protein (.1.2.3) AT5G15790 196 / 5e-63 RING/U-box superfamily protein (.1.2) AT3G02290 184 / 2e-58 RING/U-box superfamily protein (.1.2) AT5G41350 77 / 3e-17 RING/U-box superfamily protein (.1) AT4G00335 66 / 5e-13 RHB1A RING-H2 finger B1A (.1.2.3) AT4G23450 64 / 1e-12 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT4G14220 48 / 2e-06 RHF1A RING-H2 group F1A (.1) AT1G73760 47 / 6e-06 RING/U-box superfamily protein (.1) AT5G37250 45 / 8e-06 RING/U-box superfamily protein (.1) AT5G37270 45 / 1e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005084 [exp] 361 / 2e-128 AT5G38895 224 / 8e-75 RING/U-box superfamily protein (.1.2.3) Lus10024635 [exp] 88 / 2e-21 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1) Lus10032270 [exp] 84 / 3e-19 AT5G41350 192 / 2e-61 RING/U-box superfamily protein (.1) Lus10017788 [exp] 74 / 6e-16 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10004636 [exp] 59 / 4e-11 AT5G41350 74 / 3e-17 RING/U-box superfamily protein (.1) Lus10029351 [exp] 52 / 9e-08 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 52 / 1e-07 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10013606 [exp] 47 / 3e-06 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 47 / 5e-06 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100100 [exp] 290 / 2e-99 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2) Potri.004G114800 [exp] 256 / 6e-87 AT5G15790 246 / 6e-83 RING/U-box superfamily protein (.1.2) Potri.003G161600 [exp] 160 / 5e-49 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2) Potri.001G068700 [exp] 152 / 8e-46 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.010G140300 [exp] 90 / 6e-22 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.001G101700 [exp] 85 / 6e-20 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.002G161500 [exp] 81 / 3e-18 AT4G00335 159 / 8e-49 RING-H2 finger B1A (.1.2.3) Potri.003G129900 [exp] 76 / 1e-16 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.014G087000 [exp] 74 / 6e-16 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.016G066400 [exp] 48 / 2e-06 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10034367 pacid=23176130 polypeptide=Lus10034367 locus=Lus10034367.g ID=Lus10034367.BGIv1.0 annot-version=v1.0 ATGGGTGCTGTTTGTTGTTGTTTGCATCTCGAAGACTGTGAGGACTATGTGAATCCTAACAGTTCTGTATATAGAAACTGCATGTGTCTCAGTTGCTTTC TGCAGTATTTCCTACATGTGGGGACAGCATCTCTGAATTCTCCTACATCACTCGATAGCTCTCTTGCTGACATGTATCGCTCTCCTCCAAGGCCCTTGCC TTATGATGCCGATCCAAGATACTTCAGGTTGCAGCGTGACGGTCTGGTTTCAAGGCGTGAGAAGGGTTCAAGTCATTCACACGAGGAGGCAGAACCATTA AGGAGTGATAATGATGATGATGATTCCGAATACTATAGTACAGGAGATAAGTGGAAGGCATCTGCATGTGAAGAAGGTTCTAAAGAACAGCATCCTAGGT CCTCGCTTAAACTATCATCTGCAAAATCTACCTCTGGAATCAGATACATTTACTCATCTTCAGAGGATGAGGAAGTCTGCCCTACATGTCTTGAAGGTGT TAATCTAACTTTTCCTAGCAGATGTCTATTCGATGCTCTCCTGTGTTTTGTTGAGTACTCTCCGGAGAACCCTAAAATTATGACCAAGTGCTCTCACCAT TTCCACCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAGCTGTCCTGTTTGTGGAAAGGTGACCTTTAACTGTATTTTTATGTAG
AA sequence Show only first row Show all	>Lus10034367 pacid=23176130 polypeptide=Lus10034367 locus=Lus10034367.g ID=Lus10034367.BGIv1.0 annot-version=v1.0 MGAVCCCLHLEDCEDYVNPNSSVYRNCMCLSCFLQYFLHVGTASLNSPTSLDSSLADMYRSPPRPLPYDADPRYFRLQRDGLVSRREKGSSHSHEEAEPL RSDNDDDDSEYYSTGDKWKASACEEGSKEQHPRSSLKLSSAKSTSGIRYIYSSSEDEEVCPTCLEGVNLTFPSRCLFDALLCFVEYSPENPKIMTKCSHH FHLGCIYEWMERSDSCPVCGKVTFNCIFM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	0	1
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	1.4	0.8611
AT3G24740			Protein of unknown function (D...		Lus10022809 [exp]	2.0	0.8274
AT5G23850			Arabidopsis thaliana protein o...		Lus10008017 [exp]	4.2	0.8017
AT3G04350			Plant protein of unknown funct...		Lus10000813 [exp]	5.2	0.8247
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	7.9	0.8011
AT1G43130		LCV2	like COV 2 (.1)		Lus10018868 [exp]	10.0	0.8086
AT3G24740			Protein of unknown function (D...		Lus10011876 [exp]	13.5	0.7817
AT1G08800			Protein of unknown function, D...		Lus10006566 [exp]	13.9	0.7528
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	15.2	0.7997
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	16.9	0.7685

Compare expression of checked genes

Lus10034367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.