Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38900 146 / 5e-43 Thioredoxin superfamily protein (.1) AT4G02210 47 / 6e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005083 [exp] 265 / 2e-89 AT5G38900 280 / 1e-96 Thioredoxin superfamily protein (.1) Lus10034369 [exp] 185 / 2e-58 AT5G38900 318 / 1e-111 Thioredoxin superfamily protein (.1) Lus10005082 [exp] 161 / 4e-49 AT5G38900 294 / 3e-102 Thioredoxin superfamily protein (.1) Lus10018174 [exp] 155 / 3e-45 AT5G41980 68 / 1e-12 unknown protein Lus10006034 [exp] 151 / 2e-44 AT5G27260 42 / 2e-04 unknown protein Lus10010798 [exp] 154 / 2e-43 AT5G27260 61 / 5e-10 unknown protein Lus10022379 [exp] 147 / 2e-42 AT5G27260 74 / 1e-14 unknown protein Lus10004397 [exp] 146 / 9e-42 AT5G27260 77 / 6e-16 unknown protein Lus10022573 [exp] 125 / 3e-36 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100000 [exp] 189 / 2e-59 AT5G38900 329 / 2e-115 Thioredoxin superfamily protein (.1) Potri.002G200600 [exp] 45 / 2e-05 AT4G02210 471 / 1e-163 unknown protein Potri.006G265900 [exp] 42 / 0.0005 AT2G24960 761 / 0.0 unknown protein Potri.013G025200 [exp] 41 / 0.001 AT2G24960 514 / 2e-168 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034368 pacid=23176056 polypeptide=Lus10034368 locus=Lus10034368.g ID=Lus10034368.BGIv1.0 annot-version=v1.0 ATGGCTACGAAACCTGGGGTAGAAAGGACTAATGAGAGCACCAGAGAGTATAAGCTCTGGTCCAAGGTAGAGGAGCAGACCTTAGTCAACTGCATGAGTG AGCTAGTAGAGAAGAACCATGTTCAGGAAGGGAAGTTCAAGCAGACACACTTGAAGGAGTTGGAGCGTATGCTGCATGCCAGTCTCCCGAACTGCACTGA CATGGCCATACCTCAGATCAAGTCGAAGGTCCGTTACTTCAAGGAGAAGTTCATGGCCTTTCTTGAACTGAAACAATCAAGTGGCTTCGGATGGGATGAC GTGCGTGGATGTATAGTAGCTGATGAGCTTGTCTTTCAAGCCTACGTTAAGACATGGTATGTCCATGGTGCTTTGTTGGCAAGAAAAACCTTGGACAAAG CATTAGCTGCCTCGAGTGACAGATTTGATTTCGAGATTATATGGCATCCATTTCAACTGTATCCTGATGCCCCAAAGAAAGGAGTGAACTTATTACAGTT CTACAGGGAAAGGTTCGGAGGTGGAATTGATGGAATGATGGCTCGGATGTCTGAGACCTTTAGGAGCCTAGGCATGAACTACAATGTTTCGGGGCTAACA GGTTTCTTGCTGGAATGTGCCGAAAAGGTTGGATTGAAGGGAGCAGCTGATTTTCTTGATAATCCAGATAAAGGAGTGAAAGAGGTAAATGAGGAGCTGG AGAAATCAGTGATTAGAGGAGTTCCCCACTATCTGATTAATGGGAAGCACAAGTTGAGCGGAGCACAGCCACCTGAAGTTTTCCTGAGAGCTTTTGAAGT TGCTGCCAAATCATAG
AA sequence Show only first row Show all	>Lus10034368 pacid=23176056 polypeptide=Lus10034368 locus=Lus10034368.g ID=Lus10034368.BGIv1.0 annot-version=v1.0 MATKPGVERTNESTREYKLWSKVEEQTLVNCMSELVEKNHVQEGKFKQTHLKELERMLHASLPNCTDMAIPQIKSKVRYFKEKFMAFLELKQSSGFGWDD VRGCIVADELVFQAYVKTWYVHGALLARKTLDKALAASSDRFDFEIIWHPFQLYPDAPKKGVNLLQFYRERFGGGIDGMMARMSETFRSLGMNYNVSGLT GFLLECAEKVGLKGAADFLDNPDKGVKEVNEELEKSVIRGVPHYLINGKHKLSGAQPPEVFLRAFEVAAKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38900			Thioredoxin superfamily protei...		Lus10034368 [exp]	0	1
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	2.6	0.8723
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	5.6	0.8970
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	10.6	0.8776
AT4G18490			unknown protein		Lus10021779 [exp]	11.5	0.8612
					Lus10021578 [exp]	13.0	0.8098
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	13.3	0.8882
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10013979 [exp]	15.2	0.8628
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	16.7	0.8757
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009228 [exp]	18.7	0.8090
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10012778 [exp]	18.7	0.8688

Compare expression of checked genes

Lus10034368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.