Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38900 318 / 2e-111 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005082 [exp] 392 / 3e-141 AT5G38900 294 / 3e-102 Thioredoxin superfamily protein (.1) Lus10005083 [exp] 315 / 2e-110 AT5G38900 280 / 1e-96 Thioredoxin superfamily protein (.1) Lus10034368 [exp] 185 / 2e-58 AT5G38900 147 / 2e-43 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100000 [exp] 368 / 7e-131 AT5G38900 329 / 2e-115 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF01323 [flax] [poplar] DSBA DSBA-like thioredoxin domain
Representative CDS sequence Show only first row Show all	>Lus10034369 pacid=23176047 polypeptide=Lus10034369 locus=Lus10034369.g ID=Lus10034369.BGIv1.0 annot-version=v1.0 ATGGCACAGTCAGCTGGGAAGAAGCTTATCCGCATTGATGTCAGTTCAGACACCGTATGCCCATGGTGCCTTGTTGGCAAGAAAAACTTGGATAAAGCCA TAGCTGCCTCTCAGGACACGTACGATTTTGAGGTCAGATGGCACCCGTATTTCCTGAACCCTTCTGCACCTAAAGAAGGGATAAACAAGTTGCAATTTTA TAAGGAAAAGTTTGGATCTCGAGTTGATGGTATTGTGGCTAGGATGACAGATGTCTTCAGAGGGCTTGGTCTGAACTATAACTTGGATGGCCTCACGGGA AACACTCTAGACAGCCATAGGCTTATATATTTTGCGGGCAAACAAGGTCTCGATAAACAGCATAATCTTGTGGAGGAGTTGTTCCTCGGCTACTTCACTC AGGCTAAATACATTGGAGACAGAGAATTTCTACTGGAATGTGCTCAGAAAGTTGGTGTAGAGGGTGCAGCTGAGTTTCTTGATGATCCAAACAATGGGCT GCAAGAGGTGAATGAAGAGCTTAACAAATACTCCTCGGACATTAATGGTGTCCCTTACTATGTGCTAAATGGGAAGCTCAAGTTGAGCGGAGGACAGCCC CCTGAGACATTCCGGAGAACTTTCGAGGCTGCTGCAAACCAATAG
AA sequence Show only first row Show all	>Lus10034369 pacid=23176047 polypeptide=Lus10034369 locus=Lus10034369.g ID=Lus10034369.BGIv1.0 annot-version=v1.0 MAQSAGKKLIRIDVSSDTVCPWCLVGKKNLDKAIAASQDTYDFEVRWHPYFLNPSAPKEGINKLQFYKEKFGSRVDGIVARMTDVFRGLGLNYNLDGLTG NTLDSHRLIYFAGKQGLDKQHNLVEELFLGYFTQAKYIGDREFLLECAQKVGVEGAAEFLDDPNNGLQEVNEELNKYSSDINGVPYYVLNGKLKLSGGQP PETFRRTFEAAANQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	0	1
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042470 [exp]	2.4	0.8715
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10040307 [exp]	3.5	0.8674
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	3.7	0.8540
AT5G50740			Heavy metal transport/detoxifi...		Lus10038785 [exp]	4.0	0.8638
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	4.9	0.8649
AT2G36410			Family of unknown function (DU...		Lus10014379 [exp]	5.1	0.8293
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10043207 [exp]	5.5	0.8583
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10004948 [exp]	6.0	0.8441
AT3G58090			Disease resistance-responsive ...		Lus10009074 [exp]	6.5	0.8284
AT3G15140			Polynucleotidyl transferase, r...		Lus10024133 [exp]	6.9	0.8528

Compare expression of checked genes

Lus10034369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.