Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69120 215 / 3e-70 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT1G26310 213 / 3e-69 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 207 / 2e-67 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT3G30260 193 / 2e-61 MADS AGL79 AGAMOUS-like 79 (.1) AT1G24260 161 / 4e-49 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 158 / 7e-48 MADS AGL6 AGAMOUS-like 6 (.1) AT5G15800 157 / 2e-47 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT2G03710 152 / 2e-46 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G02310 153 / 4e-46 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT5G62165 146 / 1e-43 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005081 [exp] 355 / 6e-125 AT1G69120 223 / 1e-72 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10017871 [exp] 225 / 3e-75 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10021140 [exp] 228 / 8e-75 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10007983 [exp] 228 / 8e-75 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10034662 [exp] 224 / 7e-74 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10026679 [exp] 215 / 2e-70 AT1G69120 338 / 1e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10004637 [exp] 214 / 2e-70 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10015765 [exp] 163 / 7e-50 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037040 [exp] 162 / 2e-49 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115400 [exp] 232 / 5e-77 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.017G099800 [exp] 227 / 9e-75 AT5G60910 255 / 7e-86 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.012G062300 [exp] 223 / 2e-73 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.010G154100 [exp] 217 / 4e-71 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098500 [exp] 211 / 5e-69 AT1G69120 336 / 9e-118 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.014G074100 [exp] 164 / 2e-50 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.008G098400 [exp] 163 / 7e-50 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G115500 [exp] 160 / 8e-49 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.012G132600 [exp] 158 / 5e-48 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.017G099700 [exp] 158 / 6e-48 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10034370 pacid=23176102 polypeptide=Lus10034370 locus=Lus10034370.g ID=Lus10034370.BGIv1.0 annot-version=v1.0 ATGGGGAGAGGAAGGGTAGAGATGAGGAGGATAGAGAACAAGATAAGCAGGCAAGTGACCTTCTCCAAGAGGAGAGGTGGACTTTTGAAGAAAGCTCACG AGATCTCTGTTCTTTGTGATGCTCAGCTAGCCCTCATTGTTTTCTCCACTAAGGGCAAGCTCTTTGAGTACTCCTCTGATGATTCCAGCATGGACATGAT ACTGGAGAGATACGAGAGGTACTCGTATGCTGAAAAAAACCATCAACTTCCCATTACTGACCCTCAACAACAACCGGGAAGTAGCTGGACTATGGAATGT CCAAAGCTCATGTCTAGGATTGAAGTGTTGCAGAGAAATCTCAGGAACTTGGTAGGAGAAGAAATTGATCCAATGAGTCTAAGGGAGCTTCAGCAGCTGG AGCAGCAAATTGACACTGCTCTTAAGAAAGTCAGATCAAGAAAGAACCAACTCTACCATGAATCCATCTCTAATCTCCAGAAAAAGGTGCAAGAACGTTC CTTGAACGAACAAAACGGCGTGCTAGCCAAAAAGGTGAAGAAAAATGAGAAGGAAGTGGCAACAACTGAGAATGAAGAGCAGCAGCAGCACCAGAACAAT GAAATGCTTCAACTTCCTCCTATGAATATTGGGTGGGGAAAACCTCATCATCGATCATTATGTCATAACAAGCATGATCTCTTTCTGTGA
AA sequence Show only first row Show all	>Lus10034370 pacid=23176102 polypeptide=Lus10034370 locus=Lus10034370.g ID=Lus10034370.BGIv1.0 annot-version=v1.0 MGRGRVEMRRIENKISRQVTFSKRRGGLLKKAHEISVLCDAQLALIVFSTKGKLFEYSSDDSSMDMILERYERYSYAEKNHQLPITDPQQQPGSSWTMEC PKLMSRIEVLQRNLRNLVGEEIDPMSLRELQQLEQQIDTALKKVRSRKNQLYHESISNLQKKVQERSLNEQNGVLAKKVKKNEKEVATTENEEQQQHQNN EMLQLPPMNIGWGKPHHRSLCHNKHDLFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10034370 [exp]	0	1
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10034663 [exp]	5.9	0.9939
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10005081 [exp]	6.3	0.9815
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10015765 [exp]	8.4	0.9936
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013368 [exp]	10.2	0.9935
AT4G30770			Putative membrane lipoprotein ...		Lus10015689 [exp]	11.8	0.9935
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10031960 [exp]	12.5	0.8688
					Lus10011636 [exp]	13.2	0.9935
					Lus10006666 [exp]	14.4	0.8088
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	14.5	0.9935
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	15.7	0.9935

Compare expression of checked genes

Lus10034370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.