Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02310 353 / 4e-124 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT5G15800 342 / 1e-119 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT1G24260 270 / 5e-91 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G03710 249 / 6e-83 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 204 / 3e-65 MADS AGL6 AGAMOUS-like 6 (.1) AT1G69120 171 / 1e-52 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT1G26310 170 / 7e-52 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT3G61120 169 / 8e-52 MADS AGL13 AGAMOUS-like 13 (.1) AT5G60910 169 / 1e-51 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT4G09960 154 / 5e-46 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005080 [exp] 478 / 5e-173 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10003124 [exp] 289 / 2e-98 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10015765 [exp] 278 / 4e-94 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037040 [exp] 273 / 3e-92 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10034663 [exp] 265 / 1e-88 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003125 [exp] 256 / 6e-87 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10004638 [exp] 236 / 4e-78 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 213 / 4e-69 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10017870 [exp] 208 / 2e-67 AT1G69120 212 / 3e-69 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115500 [exp] 401 / 4e-143 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.017G099700 [exp] 395 / 1e-140 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.003G169600 [exp] 291 / 1e-99 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.001G058400 [exp] 287 / 5e-98 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.008G098400 [exp] 283 / 1e-96 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 225 / 1e-73 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.015G134800 [exp] 201 / 6e-64 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 197 / 7e-63 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.012G062300 [exp] 174 / 6e-54 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.004G115400 [exp] 169 / 1e-51 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10034371 pacid=23176018 polypeptide=Lus10034371 locus=Lus10034371.g ID=Lus10034371.BGIv1.0 annot-version=v1.0 ATGGGAAGGGGGAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTGACGTTTGCTAAGAGGAGAAATGGTTTGCTCAAGAAAGCTTATG AGCTGTCCGTACTCTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGCACCAACAAGGCTAACTACTTCAT CCTCAGCATGCTCAAGACACTGGAAAGGTATCAAAAGTGCAGCTATGGTGCAGTTGAAGTCAACAAACCTGCTAAAGAGCTCGAGAGCAGCTACCGTGAG TACTTGAAACTGAAGGGTAGGTATGAAGCCCTACAACGAACCCAGAGGAACCTTCTGGGGGAGGATCTAGGCCCTCTGAACACAAAGGAACTGGAGCAGC TTGAGCGCTCTTTGGAAGGTTCACTGAAGCAAGTCCGCTCCACTAAGACTCAGTACATGCTTGACCAGCTCTCTGATCTTCAAAACAAGGAGCAGCTGCT GCTTGAAGCCAATAGAGCATTGGCAATAAAGCTGGATGAAATCAGTTCGAGGAATAATCTCCGACAGTCGTGGGAAGGAGGGGAACAGAATATGTCCTAT GCTGACCACCATCAGGATCAGCATCAGCATCAACACCATAATCCACATGCTCAATCCCAAGGGTTGTTCCAGCACTTAGATTGCAACCCAACTCTGCAAA TCGGGTATAATCCGGTAGTTTCAGACCAGCAGATGACAGAAGCCACAACACATGGTCATCAACAACAAGTGAATGGGTTTATTCCTGGTTGGATGCTCTA A
AA sequence Show only first row Show all	>Lus10034371 pacid=23176018 polypeptide=Lus10034371 locus=Lus10034371.g ID=Lus10034371.BGIv1.0 annot-version=v1.0 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTNKANYFILSMLKTLERYQKCSYGAVEVNKPAKELESSYRE YLKLKGRYEALQRTQRNLLGEDLGPLNTKELEQLERSLEGSLKQVRSTKTQYMLDQLSDLQNKEQLLLEANRALAIKLDEISSRNNLRQSWEGGEQNMSY ADHHQDQHQHQHHNPHAQSQGLFQHLDCNPTLQIGYNPVVSDQQMTEATTHGHQQQVNGFIPGWML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10034371 [exp]	0	1
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10037040 [exp]	1.0	1.0000
AT3G20190			Leucine-rich repeat protein ki...		Lus10035709 [exp]	7.2	1.0000
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	7.9	0.9988
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	8.8	1.0000
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10004965 [exp]	9.9	0.9642
					Lus10011636 [exp]	10.2	1.0000
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	10.6	0.9995
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	11.4	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	12.5	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	13.5	1.0000

Compare expression of checked genes

Lus10034371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.