Plant FIBer expression Database

Lus10034375 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31720 191 / 1e-63 STG1, TAFII15, TAF10 TBP-ASSOCIATED FACTOR 10, SALT TOLERANCE DURING GERMINATION 1, TBP-associated factor II 15 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005077
[exp]
218 / 7e-74 AT4G31720 183 / 4e-60 TBP-ASSOCIATED FACTOR 10, SALT TOLERANCE DURING GERMINATION 1, TBP-associated factor II 15 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G013300
[exp]
198 / 1e-66 AT4G31720 206 / 7e-70 TBP-ASSOCIATED FACTOR 10, SALT TOLERANCE DURING GERMINATION 1, TBP-associated factor II 15 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0012 Histone PF03540 TFIID_30kDa Transcription initiation factor TFIID 23-30kDa subunit
Representative CDS sequence
>Lus10034375 pacid=23175865 polypeptide=Lus10034375 locus=Lus10034375.g ID=Lus10034375.BGIv1.0 annot-version=v1.0
ATGAACCAGCAGCAGCAGCAGCAGCAGCTCGGCGAGGGAAGAAAACACGACGATGACGCAGCTCTCACTGAGTTCCTCTCTTCCTTAATGGATTACACTC
CCACTATTCCCGACGAATTGGTGGAGCATTTCCTTGGCAAAAGCGGTTTTCACTCTCCCGATGTTCGATTGATCAGGTTAGTAGCCGTTGCTACTCAGAA
GTTCGTCTCCGAAGTTGCCAGTGATGCTCTGCAACATTGCAAGGCACGCCAGATAACAATAGTGAAGGACAAAAGAGATAAACAGCAAAAGGATAAGAGA
CTCGTATTGACTATGGAGGACTTGTCAAAGGCACTTCGTGAGTATGGTGTGAATGTGAAGCATCAGGAGTACTTTGCTGATAGCCCTTCGACTGGTATAG
ATACTGCTTCACGGGAGGAGTAA
AA sequence
>Lus10034375 pacid=23175865 polypeptide=Lus10034375 locus=Lus10034375.g ID=Lus10034375.BGIv1.0 annot-version=v1.0
MNQQQQQQQLGEGRKHDDDAALTEFLSSLMDYTPTIPDELVEHFLGKSGFHSPDVRLIRLVAVATQKFVSEVASDALQHCKARQITIVKDKRDKQQKDKR
LVLTMEDLSKALREYGVNVKHQEYFADSPSTGIDTASREE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G31720 STG1, TAFII15, ... TBP-ASSOCIATED FACTOR 10, SALT... Lus10034375
[exp]
0 1
AT3G46060 ARA3, Ara-3, At... RAB GTPase homolog 8A (.1.2.3) Lus10025309
[exp]
1.0 0.9560
AT1G58210 EMB1674 EMBRYO DEFECTIVE 1674, kinase ... Lus10004374
[exp]
1.7 0.9391
AT2G30270 Protein of unknown function (D... Lus10042235
[exp]
3.3 0.9222
AT4G35905 unknown protein Lus10041873
[exp]
3.5 0.9212
AT2G25950 Protein of unknown function (D... Lus10007454
[exp]
3.5 0.9466
AT5G63080 2-oxoglutarate (2OG) and Fe(II... Lus10001249
[exp]
3.5 0.9295
AT4G32440 Plant Tudor-like RNA-binding p... Lus10018749
[exp]
3.9 0.9320
AT1G04555 unknown protein Lus10014458
[exp]
5.7 0.9365
AT2G21150 XCT XAP5 CIRCADIAN TIMEKEEPER, XAP... Lus10012170
[exp]
7.3 0.9256
AT1G07745 SSN1, ATRAD51D,... SUPPRESOR OF SNI1, homolog of ... Lus10015220
[exp]
8.9 0.9183

Lus10034375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.