Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02230 608 / 0 ATRGP1, RGP1 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) AT5G15650 607 / 0 REVERSIBLYGLYCOSYLATEDPOLYPEPTIDE2, RGP2, ATRGP2 reversibly glycosylated polypeptide 2 (.1) AT3G08900 593 / 0 RGP3 reversibly glycosylated polypeptide 3 (.1) AT5G50750 540 / 0 RGP4 reversibly glycosylated polypeptide 4 (.1) AT5G16510 342 / 2e-117 RGP5 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005076 [exp] 677 / 0 AT3G02230 662 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10017868 [exp] 612 / 0 AT5G15650 648 / 0.0 reversibly glycosylated polypeptide 2 (.1) Lus10026676 [exp] 603 / 0 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10000646 [exp] 602 / 0 AT3G08900 662 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10004640 [exp] 602 / 0 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10036970 [exp] 602 / 0 AT3G08900 645 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10022443 [exp] 587 / 0 AT3G02230 642 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10016749 [exp] 519 / 0 AT3G02230 570 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10034665 [exp] 367 / 9e-129 AT5G15650 416 / 7e-148 reversibly glycosylated polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G099100 [exp] 642 / 0 AT5G15650 671 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.004G117800 [exp] 632 / 0 AT5G15650 663 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.015G060300 [exp] 606 / 0 AT3G08900 650 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.010G156700 [exp] 603 / 0 AT3G08900 658 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.008G097600 [exp] 598 / 0 AT3G08900 669 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.012G101100 [exp] 591 / 0 AT3G02230 610 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Potri.019G051700 [exp] 351 / 1e-120 AT5G16510 493 / 1e-176 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2) Potri.015G099400 [exp] 108 / 4e-27 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03214 [flax] [poplar] RGP Reversibly glycosylated polypeptide
Representative CDS sequence Show only first row Show all	>Lus10034376 pacid=23176027 polypeptide=Lus10034376 locus=Lus10034376.g ID=Lus10034376.BGIv1.0 annot-version=v1.0 ATGTGGAGGCCATTCTTTGAGCCTTACCATCTCATCATTGTCCAAGATGGTGACCCTTCCAAGACCATTAAGGTCCCTGATGGCTTCGACTATGTGCTCT ACAACAGGAACGACATCAACAAGATTCTGGGTCCTAAGGCCTCTTGCATCTCCTTCAAGGACTCTGCTTGTCGTTGCTTTGGCTATATGGTCTCCAAGAA GAAGTATATCTTCACCATTGATGACGATTGCTTTGTTGCCAAAGATCCATCAGGAAAGGCAGTGAATGCACTTGAGCAACATATTAAGAATCTACTCTGC CCATCAACCCCATTTTTCTTCAACACCCTTTACGACCCATTCAGAGATGGAGCTGATTTCGTTCGTGGGTATCCTTTTAGCTTAAGGGAAGGTGTCCCAA CTGCAGTCTCTCATGGTCTTTGGTTGAACATTCCTGATTACGATGCACCAACCCAGCTCGTCAAGCCTCTTGAGAGGAACACTAGGTACGTGGATGCTGT GCTGACCCTTCCTAAGGGCACATTGTTCCCAATGTGCGGCATGAATTTGGGTTTCCGCCGCGACTTGATTGGCCCCGCAATGTACTTCGGTCTCATGGGT GATGGTCAACCAATCGGCCGATACGATGATATGTGGGCTGGTTGGTGTGTCAAGGTGATATGTGATCACTTAGGGCTAGGAGTGAAGACTGGTCTCCCTT ACATATACCACAGCAAGGCAAGCAACCCATTTGTGAACCTCAGGAAAGAGTACAAGGGAATCTTCTGGCAAGAAGAGATCATCCCATTCTTTCAAGCTGT GGTACTCCCCAAGGACTGCACAACTGTGCAGAAGTGCTACGTGGAACTAGCAAAGATGGTGAAGGAGAAGTTGGGGAAGATCGATCCTTACTTTGACAAG CTTGCAGATGCCATGGTCACCTGGATTGACGCGTGGGACGAGCTCAACCCGACGGGACCAGGAGCAGCAGCCACTAAGGGCAAAAAATAA
AA sequence Show only first row Show all	>Lus10034376 pacid=23176027 polypeptide=Lus10034376 locus=Lus10034376.g ID=Lus10034376.BGIv1.0 annot-version=v1.0 MWRPFFEPYHLIIVQDGDPSKTIKVPDGFDYVLYNRNDINKILGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKAVNALEQHIKNLLC PSTPFFFNTLYDPFRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVLTLPKGTLFPMCGMNLGFRRDLIGPAMYFGLMG DGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIYHSKASNPFVNLRKEYKGIFWQEEIIPFFQAVVLPKDCTTVQKCYVELAKMVKEKLGKIDPYFDK LADAMVTWIDAWDELNPTGPGAAATKGKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	0	1
AT3G02125			unknown protein		Lus10013196 [exp]	1.7	0.9433
					Lus10005955 [exp]	3.0	0.9304
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	3.2	0.9324
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10023633 [exp]	5.5	0.8492
AT3G24850	B3		Domain of unknown function (DU...		Lus10038802 [exp]	5.7	0.8424
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	6.0	0.8350
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10009226 [exp]	6.9	0.8711
AT3G10020			unknown protein		Lus10002842 [exp]	6.9	0.8779
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	7.3	0.8669
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	10.4	0.8839

Compare expression of checked genes

Lus10034376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.