Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38970 648 / 0 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT3G30180 635 / 0 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G05690 297 / 2e-96 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 274 / 4e-87 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT1G12740 260 / 3e-82 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G45340 251 / 1e-78 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G36380 250 / 1e-77 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G50660 249 / 2e-77 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT4G19230 246 / 8e-77 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT1G73340 247 / 2e-76 Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005075 [exp] 867 / 0 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10000647 [exp] 542 / 0 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10014240 [exp] 529 / 0 AT3G30180 531 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10014850 [exp] 288 / 1e-92 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10040193 [exp] 288 / 1e-92 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10024495 [exp] 280 / 8e-90 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10028345 [exp] 255 / 8e-80 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 251 / 2e-78 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10041794 [exp] 249 / 2e-77 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G117700 [exp] 754 / 0 AT5G38970 655 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Potri.017G099000 [exp] 754 / 0 AT3G30180 648 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.010G156800 [exp] 580 / 0 AT3G30180 561 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.010G189800 [exp] 306 / 8e-100 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 306 / 9e-100 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G200100 [exp] 285 / 2e-91 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G122500 [exp] 279 / 3e-89 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G109100 [exp] 277 / 2e-88 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.003G038200 [exp] 275 / 1e-87 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G026500 [exp] 268 / 4e-85 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10034377 pacid=23175970 polypeptide=Lus10034377 locus=Lus10034377.g ID=Lus10034377.BGIv1.0 annot-version=v1.0 ATGGGTTGGCCCGTTTTTGGAGAAACCACCGATTTCCTTAAGCATGGCCCTAACTTCATGAAGAACCAGAGAGCAAGGTATGGGAGTTTTTTCAAGTCCC ACATACTGGGTTGTCCAACAGTGGTGTCAATGGATCCAGAGGTGAACAGATACATACTGATGAATGAAGGGAAAGGGCTAGTTCCAGGTTACCCACAGTC GATGCTTGACATATTGGGGAAATGCAACATTGCAGCAGTTCATGGCTCTACCCACAAGTACATGAGAGGTGCTCTCCTTTCTCTCATCAGCCCCACCATG ATCAGACTCCACCTCTTGCCCACCATTGACACCTTCATCAGATCCCACCTCTCCAATTGGGATTCCCAAATCATTGACATCCAACTCAAAACCAAAGAGA TGGCACTTCTTTCATCACTTAAGCAGATAGCTGGGGCAGAATCTGGAACTTTCAGTGATGCATTCATGCCTGAGTTTTTCAAGCTGGTTTTAGGGACCTT GTCATTGCCAATAGACCTACCTGGAACAAGCTATCGGCGCGGGGTTCAGGCTAGGAAGATCATTGTGGCGATGCTGAAGGAGCTGATAATGAACAGGAGG AACTCTAAGGAATCCTACAGTGACATGCTTGGTTCCCTCATGAACACTAGTGATGAGAATAGGTACAAGTTGAGTGATGATGAGATAATTGATCAGGTCA TTACTATCCTCTACTCCGGATATGAGACTGTTTCAACCACTTCAATGATGGCTGTCAAGTATCTCCATGACCATCCTAAAGCTCTTCAACAACTGAGAGA AGAGCATCTGGCAATTAGAGCAAAGAAGAAGCCTGAGGAACCACTCGACTTTAATGACCTAAAGTCAATGCGTTTCACACGAGCGGTGATCTTTGAGGCC TCAAGATTGGCTACAATAGTTAATGGGGTATTGAGGAAGACAACTCAAGAAATGGAAATAAATGGATTTGTGATACCAGAAGGGTGGAGAATCTATGTTT ACACAAGGGAGATGAACTATGATCCCTACTTCTATCCTGACCCATTGTCCTTCAACCCATGGAGATGGCTGGATAAAAGCTTGGAATCTCAGAACTATCA CTTCATTTTTGGAGGGGGTACTAGGCAGTGCCCTGGAAAGGAACTAGGAATAGCAGAAATTGCAACTTTTCTCCACTACTTTGTAACTAGATACAGGTGG GAAGAAGTTGGAGGGGACAAACTAATGAAGTTTCCAAGAGTTGAAGCCCCCAATGGGCTGCATGTTAGGATTTCTCATCTAAATAATTAG
AA sequence Show only first row Show all	>Lus10034377 pacid=23175970 polypeptide=Lus10034377 locus=Lus10034377.g ID=Lus10034377.BGIv1.0 annot-version=v1.0 MGWPVFGETTDFLKHGPNFMKNQRARYGSFFKSHILGCPTVVSMDPEVNRYILMNEGKGLVPGYPQSMLDILGKCNIAAVHGSTHKYMRGALLSLISPTM IRLHLLPTIDTFIRSHLSNWDSQIIDIQLKTKEMALLSSLKQIAGAESGTFSDAFMPEFFKLVLGTLSLPIDLPGTSYRRGVQARKIIVAMLKELIMNRR NSKESYSDMLGSLMNTSDENRYKLSDDEIIDQVITILYSGYETVSTTSMMAVKYLHDHPKALQQLREEHLAIRAKKKPEEPLDFNDLKSMRFTRAVIFEA SRLATIVNGVLRKTTQEMEINGFVIPEGWRIYVYTREMNYDPYFYPDPLSFNPWRWLDKSLESQNYHFIFGGGTRQCPGKELGIAEIATFLHYFVTRYRW EEVGGDKLMKFPRVEAPNGLHVRISHLNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38970		ATBR6OX, CYP85A...	brassinosteroid-6-oxidase 1 (....		Lus10034377 [exp]	0	1
AT1G06980			unknown protein		Lus10042244 [exp]	5.3	0.9468
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	7.0	0.9475
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	12.4	0.9430
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	12.6	0.9406
AT1G06980			unknown protein		Lus10026407 [exp]	13.6	0.9372
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	15.2	0.9420
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038009 [exp]	15.7	0.8869
AT3G47710	bHLH	BNQ3, PRE4, bHL...	BASIC HELIX-LOOP-HELIX PROTEIN...		Lus10024241 [exp]	17.7	0.9404
AT4G16563			Eukaryotic aspartyl protease f...		Lus10000725 [exp]	18.3	0.9394
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	22.2	0.9349

Compare expression of checked genes

Lus10034377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.