Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G09990 261 / 3e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1) AT5G18380 260 / 6e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3) AT3G04230 245 / 5e-85 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012599 [exp] 301 / 5e-107 AT5G18380 261 / 4e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3) Lus10035133 [exp] 291 / 8e-103 AT2G09990 258 / 4e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10031970 [exp] 291 / 8e-103 AT2G09990 258 / 4e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10038012 [exp] 288 / 7e-102 AT2G09990 258 / 5e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10009252 [exp] 288 / 7e-102 AT2G09990 258 / 5e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304700 [exp] 277 / 2e-97 AT2G09990 267 / 9e-94 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.008G150000 [exp] 271 / 4e-95 AT2G09990 262 / 1e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.010G091000 [exp] 270 / 1e-94 AT2G09990 260 / 7e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00380 [flax] [poplar] Ribosomal_S9 Ribosomal protein S9/S16
Representative CDS sequence Show only first row Show all	>Lus10034378 pacid=23175934 polypeptide=Lus10034378 locus=Lus10034378.g ID=Lus10034378.BGIv1.0 annot-version=v1.0 ATGGCGACGGCAGCAGCTGCCTCCCCGATCGAGTCCGTCCAGTGCTTCGGCCGCAAGAAGACCGCGGTCGCCGTCACTCACTGTAAGCGAGGAAGGGGAC TCATCAAGCTCAATGGCACCCCAATCGAGCTCGTGGAGCCCGAGATCCTCCGTTTCAAGGCCGTCGAACCCATCCTCCTCCTAGGCCGCCACCGTTTCAG CGGCGTCGACATGCGCATCCGAGTCAAAGGAGGCGGACACACCTCCCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCACTCGTCGCTTTCTACCAG AAGTTCGTCGACGAGCAGAGCAAGAAGGAGATCAAGGACCTCTTGGTCAGCTACGACAGGACTTTGCTCGTCGCCGATCCCAGACGTTGCGAGCCTAAGA AGTTCGGTGGCCGCGGTGCTCGTTCCAGATTCCAGAAGAGTTACCGTTGA
AA sequence Show only first row Show all	>Lus10034378 pacid=23175934 polypeptide=Lus10034378 locus=Lus10034378.g ID=Lus10034378.BGIv1.0 annot-version=v1.0 MATAAAASPIESVQCFGRKKTAVAVTHCKRGRGLIKLNGTPIELVEPEILRFKAVEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQ KFVDEQSKKEIKDLLVSYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10034378 [exp]	0	1
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10039888 [exp]	2.2	0.9229
AT2G40510			Ribosomal protein S26e family ...		Lus10029042 [exp]	4.1	0.9132
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	4.2	0.9393
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	4.6	0.9311
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	4.8	0.9473
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032962 [exp]	9.5	0.9225
AT4G29830		VIP3	vernalization independence 3, ...		Lus10021571 [exp]	10.5	0.9114
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	10.5	0.9192
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10023438 [exp]	13.1	0.8904
AT3G49470		NACA2	nascent polypeptide-associated...		Lus10015579 [exp]	13.5	0.9152

Compare expression of checked genes

Lus10034378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.