Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02210 681 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT5G60920 657 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G29810 640 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT5G15630 583 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT1G09790 434 / 3e-150 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 209 / 1e-65 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 147 / 2e-38 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 140 / 6e-36 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 128 / 7e-32 COBL8 COBRA-like protein 8 precursor (.1) AT4G27110 124 / 2e-30 COBL11 COBRA-like protein 11 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012598 [exp] 844 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034671 [exp] 674 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 667 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 666 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 582 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 581 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 569 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 567 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 567 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G117100 [exp] 696 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060000 [exp] 683 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 594 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 589 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 576 / 0 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 560 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 553 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 529 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 478 / 1e-167 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 396 / 3e-135 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10034379 pacid=23176106 polypeptide=Lus10034379 locus=Lus10034379.g ID=Lus10034379.BGIv1.0 annot-version=v1.0 ATGGGACGACGACTCATATCCAGATTCACCATTCTTCTGCTTTCCCTCATCTTTACTCCAAAAACAGAAGCTTACGATCCGCTTGACCCAAATGGAAATA TCACTATCAAATGGGACATAAAAAGCTGGAACGCTGATGGCTACCTTGCGATAGTGACACTGTACAACTTCCAGCAATATCGTCACATTCAAGCACCGGG ATGGACATTGGGATGGACATGGCAGAAGAGGGAAGTCATATGGGACATGGTTGGGGCGCAGACTACCGATCAGGGCGATTGTTCGAGATTCAAAGGTACT ACTATTCCACATTGCTGCAAGAAGATCCCCACTGTTGTGGATTTGTTGCCCGGAACGCCTTACAACAAGCAGGTCGCCAACTGCTGCAAGGGCGGAGCGC TAACTTCGTGGGAGCAAGATCAAGACAATGCTGCTGCTTCTTTCCAGATTAGCGTTGGTCAAGCTGGAACCAACAATAAGACGGTCAAGCCGCCTGTGAA CTTCACTCTGCTGGCTCCTGGACCTGGCTATACTTGTAGCCCGGCTAAAATTGTCAGACCGAGTAGGTTCTTGAGTCCTGATAAGAGAAGGTTCACCCAA GCTCTGACGACTTGGAATTTAACATGCACATACTCTCAGACACTTGCTCAGAAGACCCCTATTTGTTGCGTTTCCCTATCATCGTTCTACAACGATACGG TTGTGCCCTGTCCAACATGCTCTTGTGGCTGCAGAAGCAACATTACCCAGTCTAGAAGCTGTGTTAACCCAGATTCACCACGTTTAGCTTCTGTTATTTC GAATCCTGGGAAGAACAGCTTGGCTCCTGTTGTTCAATGTACAAACCACATGTGCCCCATCAGAGTTCATTGGCACGTTAAACTCAACTACAAGCAGTAC TGGCAAGTGAAGGTCACCATCACCAATTTCAACTACGCGATGAACTATTCCGAGTGGAACTTGGTGGTTCAGCATCCCAACTTCGACAATCTCACCCAGA TATTCAGCTTCAATTACAAGTCTTTGACTCCATATGCATCCATCAATGATACTGCACTGTTGTGGGGAGTGAAATTCTATAACGATCTGCTCATGCAAGC CGGTGCAGCTGGCAACGTGCAGTCGGAGTTGCTCTTTCAGAAGGAAACCACAACTTTCACGTTCGACAAAGGTTGGGCATTCCCTAGAAGGATCTACTTC AATGGCGACAACTGTGTAATGCCTCCTCCAGATGCCTATCCCTGGTTACCTAATGCCAGCTCGCACCGCCCCATCTCCCTATTGCTCCTCCTTCTGATCA CTACCGTGACTGCTCTCGCTTTCCTACTGTGA
AA sequence Show only first row Show all	>Lus10034379 pacid=23176106 polypeptide=Lus10034379 locus=Lus10034379.g ID=Lus10034379.BGIv1.0 annot-version=v1.0 MGRRLISRFTILLLSLIFTPKTEAYDPLDPNGNITIKWDIKSWNADGYLAIVTLYNFQQYRHIQAPGWTLGWTWQKREVIWDMVGAQTTDQGDCSRFKGT TIPHCCKKIPTVVDLLPGTPYNKQVANCCKGGALTSWEQDQDNAAASFQISVGQAGTNNKTVKPPVNFTLLAPGPGYTCSPAKIVRPSRFLSPDKRRFTQ ALTTWNLTCTYSQTLAQKTPICCVSLSSFYNDTVVPCPTCSCGCRSNITQSRSCVNPDSPRLASVISNPGKNSLAPVVQCTNHMCPIRVHWHVKLNYKQY WQVKVTITNFNYAMNYSEWNLVVQHPNFDNLTQIFSFNYKSLTPYASINDTALLWGVKFYNDLLMQAGAAGNVQSELLFQKETTTFTFDKGWAFPRRIYF NGDNCVMPPPDAYPWLPNASSHRPISLLLLLLITTVTALAFLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10034379 [exp]	0	1
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Lus10018719 [exp]	1.7	0.8035
AT1G11340			S-locus lectin protein kinase ...		Lus10005136 [exp]	16.1	0.6773
					Lus10042500 [exp]	28.2	0.6415
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10004582 [exp]	30.3	0.6736
AT1G30920			F-box family protein (.1)		Lus10006734 [exp]	30.6	0.6623
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10015374 [exp]	34.2	0.6285
AT2G17080			Arabidopsis protein of unknown...		Lus10023952 [exp]	36.7	0.6880
					Lus10007176 [exp]	40.0	0.6138
					Lus10019746 [exp]	46.5	0.6160
					Lus10029164 [exp]	78.7	0.5981

Compare expression of checked genes

Lus10034379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.