Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26090 447 / 7e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034265 [exp] 410 / 6e-144 AT1G26090 233 / 1e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G130700 [exp] 484 / 2e-169 AT1G26090 460 / 3e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G115401 [exp] 172 / 1e-51 AT1G26090 145 / 1e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G115467 [exp] 0 / 1 AT1G26090 0 / 1 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02374 [flax] [poplar] ArsA_ATPase Anion-transporting ATPase
Representative CDS sequence Show only first row Show all	>Lus10034381 pacid=23175838 polypeptide=Lus10034381 locus=Lus10034381.g ID=Lus10034381.BGIv1.0 annot-version=v1.0 ATGCCATCCTCCACAGCCATGGCATCTTCTCTATCTTATTCTTTCCTTCCCCTAACGTACACAAATTATAATCTCCACTTACCAAAATGCTTACCACCCA CCACTTCCCGCGGAAGAACACCACCAGCAGTACTATCCATCTCAGCTTCTTCTTCCTCCTCCTCACAATTGCCCAAATTGGTCACCTTTCTCGGAAAAGG CGGCGCCGGAAAAACCAATGCCTCCGTTTTTGCTGCTCAGCATTATGCCCTGAGCGGCCTGAATACTTGCCTGGTAATTCAGACCCAAGATCCTTCTGCC GATCATCTCCTCAACTGCAAGATTGGTACCTCCCCTGTTATCTGCAGTCCCAACCTTTCCGCTGTTAGGTTGGAAACCTCCAAAATGCTGCTTGAGCCTC TGAATCGACTGAAGCAAGCGGATGCTCATCTTAACTTGACTCAAGGTGTTCTTGGAGGGGTGGTTGGGGAAGAGCTAGGAGTGCTTCCTTCCATGGATTC TGTTTTCGGAGCATTCGTTCTCGAGAGGCTCGTTGGCTTCTTGACAGATGTGAAGGACAAGAAGAAGAACGGCAATGAGGATAGATATGACATTATAATT TATGATGGAATTGGCTCTGATGAAACTTTGAGGATGATATCTGCTGCCTCTAAGACAAGGTTGTACTTGAAATATGTGAGGAATATGGCTGAGAAGACTG ACCTTGGGAGATTGGCTACTCCTTCAGTGTTGAGACTGCTAGATGAAGCACTGGATTTAACCGATAGGAGATCCTTCTTGAACGGACCAAGGGGTTCGGA AATGTGGGACGTTTTGGAAAACAAGTTGGAGAAGGGAGCTTCTGTGTTTGCTGATCCAAATAGGTTTGGTTGCTTCATAGTGATGGATCCCACCAATCCA GTCTCTGTGAGCTCTGCATTACGTTACTGGGGTTGCGCTATCCAGGCTGGGACAAAGGTTTCTGGCGCCATTGGGTCAACTTCTTCTCCAAGCTTGAGTG ATGAAGTCAGGCAAAAGTTTTCACCTTTGCCTTACGCTTGCCTTCCTGATTTGTCAATGCATGATCCTTCGAGTTGGGATGAAATCCTGCAAAACTCACT CAACCAAGATGGAAGGGCTTTGTTTTCTCCATCAGCAAGTGGTGTCAGTAGCATAACATCACCGGTGGAATTCGATACAGCTAAAAAATCAGTAACACTT TTCATGCCGGGTTTTGACAAGTCTGAGATTAAGCTATACCAATATAGAGGAGGATCTGAGTTGTTGGTGGAAGCAGGGGATCAGAGGCGTGTGATTGTTC TGCCACCGAAAATTCAAGGGAAAGTGGGAGGTGCAAAGTTCATCGAGAGAAGTCTAGTGATCACAATGCGATAA
AA sequence Show only first row Show all	>Lus10034381 pacid=23175838 polypeptide=Lus10034381 locus=Lus10034381.g ID=Lus10034381.BGIv1.0 annot-version=v1.0 MPSSTAMASSLSYSFLPLTYTNYNLHLPKCLPPTTSRGRTPPAVLSISASSSSSSQLPKLVTFLGKGGAGKTNASVFAAQHYALSGLNTCLVIQTQDPSA DHLLNCKIGTSPVICSPNLSAVRLETSKMLLEPLNRLKQADAHLNLTQGVLGGVVGEELGVLPSMDSVFGAFVLERLVGFLTDVKDKKKNGNEDRYDIII YDGIGSDETLRMISAASKTRLYLKYVRNMAEKTDLGRLATPSVLRLLDEALDLTDRRSFLNGPRGSEMWDVLENKLEKGASVFADPNRFGCFIVMDPTNP VSVSSALRYWGCAIQAGTKVSGAIGSTSSPSLSDEVRQKFSPLPYACLPDLSMHDPSSWDEILQNSLNQDGRALFSPSASGVSSITSPVEFDTAKKSVTL FMPGFDKSEIKLYQYRGGSELLVEAGDQRRVIVLPPKIQGKVGGAKFIERSLVITMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26090			P-loop containing nucleoside t...		Lus10034381 [exp]	0	1
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Lus10027035 [exp]	6.5	0.8281
AT3G63510			FMN-linked oxidoreductases sup...		Lus10029508 [exp]	7.3	0.8204
AT4G31650	B3	REM6	Transcriptional factor B3 fami...		Lus10026265 [exp]	9.4	0.7973
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	12.2	0.8391
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10023283 [exp]	15.7	0.8400
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	15.9	0.8500
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10031930 [exp]	18.0	0.8395
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10011282 [exp]	20.4	0.8172
AT1G74710		ATICS1, SID2, E...	SALICYLIC ACID INDUCTION DEFIC...		Lus10023622 [exp]	25.8	0.8239
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10002222 [exp]	29.1	0.8362

Compare expression of checked genes

Lus10034381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.