Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25690 610 / 0 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT4G18570 313 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G48280 266 / 3e-78 hydroxyproline-rich glycoprotein family protein (.1) AT1G07120 237 / 2e-69 unknown protein AT1G52080 167 / 1e-43 AR791 actin binding protein family (.1) AT4G04980 67 / 7e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034264 [exp] 1603 / 0 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10000986 [exp] 327 / 2e-100 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 324 / 2e-98 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 323 / 2e-98 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031863 [exp] 235 / 2e-68 AT1G07120 393 / 2e-135 unknown protein Lus10038254 [exp] 151 / 7e-38 AT1G52080 333 / 2e-106 actin binding protein family (.1) Lus10025846 [exp] 150 / 2e-37 AT1G52080 337 / 4e-108 actin binding protein family (.1) Lus10031293 [exp] 142 / 9e-37 AT1G07120 267 / 3e-87 unknown protein Lus10011209 [exp] 79 / 2e-14 AT4G04980 336 / 2e-100 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G130800 [exp] 1099 / 0 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 336 / 2e-101 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 336 / 2e-101 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.004G054900 [exp] 320 / 3e-97 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G064500 [exp] 302 / 1e-90 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G003100 [exp] 280 / 4e-83 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G279000 [exp] 271 / 4e-81 AT1G07120 440 / 2e-153 unknown protein Potri.009G073600 [exp] 261 / 2e-77 AT1G07120 434 / 4e-151 unknown protein Potri.001G191300 [exp] 166 / 1e-42 AT1G52080 349 / 3e-112 actin binding protein family (.1) Potri.003G047200 [exp] 157 / 8e-40 AT1G52080 348 / 3e-112 actin binding protein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034382 pacid=23176036 polypeptide=Lus10034382 locus=Lus10034382.g ID=Lus10034382.BGIv1.0 annot-version=v1.0 ATGATTGTCAGGGTAGGTCTCCTGGTTGCTGCTTCAATTGCAGCCTATGCAGTTAAGAAGAATAATGTCAAAAATCCAAATTCATCAGCTTTAGCAAAGG CTTCAGAAAATGGCGAACAAGGTCCCGAGAAGCATCAAAGCGAGGGGAAAGGCCAAGAGCAGATTGTATATTCTGATGGTAACCTCAAGGAGACTGATGG GAATGAAGAAGACGAAGAAGAAGATAAAGAAGAGGTGAAATTGATCAGTAGCATATCCAACGGTTCTCGTGATGTTCCTGCTGGGTTGGACGATGAAGAC ATCTTTCCTGAATTTGAGGATTTCTTATCAGGGGAGATTGAATATTCATTACCAAGTGACAAGTTTGATATGTCTGAGAGAAACAAGGTTTACGAAAGTG AGATGGCAAACAATGCCAGTGAACTGGAACGTCTACGCAACTTGGTGATGGAATTGGAGGAAAGAGAAGTGAAGCTTGAAGGTGAATTGCTGGAGTACTA TGGGCTGAAGGAGCAAGAATCAGATATTGTTGAATTGCAAAGGCAGCTCAAGATTAAGACAGTCGAGGTTGACATGTTGAATATAACCATCAATTCATTG CAGTCTGAGAAGAAGAGGCTTCAGGAGGAACTTGCACAAGGAGGAGGAGGTTCGGCCCGGAAAGAGCTGGAAGTGGCAAGGAACAAAATTAAAGAACTCC AGAGGCAGATACAGCTTGATGCTAACCAGACAAAGGGACAGCTGCTATTGCTCAAACAACAGGTTTCTGGTCTCTTGGCGAAAGAGGAAGAAGCTATCAG GAAAGATGTTGAGGTTGAAAGGAAGATGAAGATTGTGAAGGACTTGGAGATGGAGGTTGCAGAGCTGAAGAGGAAGAATAGAGAGCTTCAACATGAGAAG AGACAGTTGACTGTTAAGCTGGATGCTGCTGAAGGAAAAATAACAGCCCTATCCAATATGACTGAGAACGAACTGGTTGCTAATGCAAGAGAAGAGGTCA ACAATCTGAGGCATTCAAATGAAGACCTATTGAAACAAGTGGAAGGACTTCAAATGAACAGGTTCAGTGAAGTTGAAGAGCTAGTGTATCTCCGTTGGGT TAACGCATGCTTGAGATACGAGCTGCGGAACTACCAAGCACCTGCTGGGAAAATGTCAGCTCGTGAACTGAGCAAAAACCTCAGTCCCAAGTCACAGGAG AAGGCTAAACAGCTAATGTTAGATTATGCTGGATCAGAACGTGGAGGAGGACAAGGGGATACAGACATGGAGAGCAACTTTTCTCATCCATCTTCCCCCG GGAGTGAGGATTTCGACAATGTTTCTGTTGATAGTTCCTTCAGCAAATACAGTAGTCTCAGTAGGAAGCCTAGTTTAATGCAAAAGCTGAAGAAATGGGG AAAAAGCAAAGATGATTCAAGTGCCTTTTCATCACCAGCAAGGTCTCTAACAGGCTCTCCCAGCAGGTCAAGTATGAGCGTTAGACCGAGGGGTCCATTA GAAGCATTGATGCTAAGAAATGCTGGCGATAATATGGCTATCACAACTTTTGGCAAGATGGATCAGGATGCTCCCGACTCTCCTGAAACTCCAACTCTTC CACCCATGAAAACACAAAACTCCGCAGTCGATTCGCTGAATAATGTTGCTTCCTCTTTCCAAGTGATGTCCAAGTCGGTTTCGGGAGTTCTAGACGAAAA ATACCCTGCCTATAAAGACCGGCATAAGTTGGCATTGGAGAGGGAAAAAAATATCAAGGAAAGAGCTGGACAAGCAAGAGCTGCCAAGTTCGGTAATAGT TCAAATTTGGAGTCAAGGGGAATGGGAGAAAACAGGCCTGCAAATTTGCCACCACAGCTAGCTCGACTGAAAGAGAGACCACTCGTTTCGACTGCTACCG TGAATGACCAGTCCACGGATGGAAAGTCTGGTGATTCTCCAGCAGCAGTGAGCAAGATTAAATTTGCTGACATTGAGAAGAGACCTCCTAGAGTGCCTAG ACCACCTCCTAAAGCATCAACTGCTGGTAATCCATCAAGTGGAGTTCCCGGTGCTCCTCCACCTCGTCCTGCAGGCGCTCCTCCGCCACCACCACCACCT CCCACTGGTGGTGGTCCTCCACCTCCACCGCCGCCTCCTGGAAGCTTGCCTAGAGGAGGAACTGGTGATAAAGTTCACAGGGCTCCTGAGTTGGTTGAAT TCTATCAGTCATTGATGAAACGGGAGGCAAAGAAGGACACGTCATTGTTGATTTCTTCAACAACCAATGCTTCAGATGCCAAGAGCAATATGATTGGGGA GATTGAGAACAGATCAACATTCCTCTTAGCTGTGAAAGCAGATGTGGAGACTCAAGGTGATTTTGTGCAGTCCTTGGCAAGTGAAGTGAGGGCAGCCTCT TTCAGCAACATAAATGACTTGTTAGCCTTTGTGAATTGGCTAGACGAGGAACTCTCCTTCCTGGTGGACGAAAGGGCGGTTCTGAAGCACTTTGAATGGC CCGAAAGCAAGGCTGACGCATTGAGAGAGGCAGCTTTTGAGTACCATGACTTGATGAAGTTAGAAAAGCAAGTAACATCTTTTGATGATGATCCCAGCCT CTCTTGTGATGCTGCTCTCAAAAAGATGTACAAACTACTGGAGAAGGTGGAGAATAGCGTATATGCACTTCTCCGCACAAGGGATATGGCGATTTCACGG TACAGGGAGTTTGGGATTCCAGTCGACTGGCTTCAAGACGCTGGAGTAGTTGGCAAGATTAAACTCTCGTCTGTTCAGTTGGCAAGAAAGTATATGAAAC GTGTATCGATGGAGCTCGATGCTCTGAGTGGACCTGAGAACGAACCTACCAGAGAGTTTATACTCTTGCAAGGAGTGCGCTTTGCATTCCGTGTTCATCA GTTTGCTGGAGGGTTTGATGCTGAGAGCATGAAGGCATTTGAAGAACTGCGGAGTCGGGTGCATTCCAAAGGAGAAGACGATGGCAATAATGTGGAAGTA GCAGAACAACAATGA
AA sequence Show only first row Show all	>Lus10034382 pacid=23176036 polypeptide=Lus10034382 locus=Lus10034382.g ID=Lus10034382.BGIv1.0 annot-version=v1.0 MIVRVGLLVAASIAAYAVKKNNVKNPNSSALAKASENGEQGPEKHQSEGKGQEQIVYSDGNLKETDGNEEDEEEDKEEVKLISSISNGSRDVPAGLDDED IFPEFEDFLSGEIEYSLPSDKFDMSERNKVYESEMANNASELERLRNLVMELEEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEVDMLNITINSL QSEKKRLQEELAQGGGGSARKELEVARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLLAKEEEAIRKDVEVERKMKIVKDLEMEVAELKRKNRELQHEK RQLTVKLDAAEGKITALSNMTENELVANAREEVNNLRHSNEDLLKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQAPAGKMSARELSKNLSPKSQE KAKQLMLDYAGSERGGGQGDTDMESNFSHPSSPGSEDFDNVSVDSSFSKYSSLSRKPSLMQKLKKWGKSKDDSSAFSSPARSLTGSPSRSSMSVRPRGPL EALMLRNAGDNMAITTFGKMDQDAPDSPETPTLPPMKTQNSAVDSLNNVASSFQVMSKSVSGVLDEKYPAYKDRHKLALEREKNIKERAGQARAAKFGNS SNLESRGMGENRPANLPPQLARLKERPLVSTATVNDQSTDGKSGDSPAAVSKIKFADIEKRPPRVPRPPPKASTAGNPSSGVPGAPPPRPAGAPPPPPPP PTGGGPPPPPPPPGSLPRGGTGDKVHRAPELVEFYQSLMKREAKKDTSLLISSTTNASDAKSNMIGEIENRSTFLLAVKADVETQGDFVQSLASEVRAAS FSNINDLLAFVNWLDEELSFLVDERAVLKHFEWPESKADALREAAFEYHDLMKLEKQVTSFDDDPSLSCDAALKKMYKLLEKVENSVYALLRTRDMAISR YREFGIPVDWLQDAGVVGKIKLSSVQLARKYMKRVSMELDALSGPENEPTREFILLQGVRFAFRVHQFAGGFDAESMKAFEELRSRVHSKGEDDGNNVEV AEQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Lus10034382 [exp]	0	1
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10003969 [exp]	2.2	0.9371
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10039629 [exp]	3.2	0.9587
AT1G78995			unknown protein		Lus10033323 [exp]	3.2	0.9570
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10006931 [exp]	8.8	0.9422
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	8.9	0.9412
AT3G05410			Photosystem II reaction center...		Lus10004498 [exp]	9.5	0.9339
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	10.6	0.9208
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10035545 [exp]	14.1	0.9278
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10019793 [exp]	14.3	0.9030
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10007429 [exp]	15.1	0.9261

Compare expression of checked genes

Lus10034382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.