Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13220 553 / 3e-177 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) AT1G67230 489 / 6e-153 CRWN1, LINC1 CROWDED NUCLEI 1, little nuclei1 (.1) AT1G68790 455 / 1e-140 CRWN3, LINC3 CROWDED NUCLEI 3, little nuclei3 (.1) AT5G65770 199 / 6e-52 CRWN4, LINC4 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) AT5G65780 188 / 2e-48 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034263 [exp] 1879 / 0 AT1G13220 672 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10003075 [exp] 431 / 3e-131 AT1G67230 805 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10003074 [exp] 358 / 2e-105 AT1G67230 681 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034076 [exp] 352 / 7e-103 AT1G67230 702 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034075 [exp] 317 / 5e-91 AT1G67230 606 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10019257 [exp] 207 / 3e-54 AT5G65770 835 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Lus10011568 [exp] 198 / 2e-51 AT5G65770 831 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114800 [exp] 900 / 0 AT1G13220 567 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Potri.017G111400 [exp] 501 / 5e-157 AT1G67230 793 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Potri.012G034300 [exp] 251 / 2e-68 AT5G65770 844 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034383 pacid=23175849 polypeptide=Lus10034383 locus=Lus10034383.g ID=Lus10034383.BGIv1.0 annot-version=v1.0 ATGTTGCCAAGACGCGGATTGCTGCCGGGGAAGAGCCGGCCGTCGCCGGCAGTCACGCTGAATCCTCGGAGCGAGGCGCACAATGGCGTTGGTTCATCCA ATGCGGCTACGTCAAACCCTAGGAGTGTGGGGAAAGGAAAGGCCGTGGCTTTTGTCGACGGTCCCAGTCTCCCGCCACCTCATCCTCCGCCGACTGGGTT GCTGAGTGATAGTGATATGGCAACTGAGGATGAAGATTTTGAAGCCTGGAGGCGGGGTAGGGAGGTGGGTTTGTTGGACGAGGCTGTTATGGAGAGAAAG GATCGTGAGGCACTTATGGAGAAGGCTTCAGCACTTGAAAAAGAGCTTTTTGACTACCAGTATAACATGGGGATGCTTCTTATTGAAAAGAAAGAGTGGA CAGCGAAACTTGAAGAACTTAGGCAAGCAGTGGAAGAGGCACAAGAGATCCTCAAACGAGATCAATCGACACACTTGATTGCGCTGTCAGAAATGGAGAG GCGTGAACAAAGTTTAAGGGAAGCTTTGAGGGTTGAGCAACAATGTGTGGCTGATCTTGAGAAGGCTTTACATCAATTGAAGGACGAGCATGTACGGGTC AAGCATGCTTCTGAGACAAAATTGGCAGATGCCGAAGCTTTAGTTGCTGGTATTGAAGGGAAGTCTGTGGCCGTGAAGGAGAATATGCATACCGTTGAAG AGAAGCTATCAGAAGTAAACCAAAAGAGTCTAGAACTGGATTTAAAACTGCAAGAAGTTGAAGCTCGTGAAACTTCAATTCAGAGAGAACGGCTCTCCTT GCATACAGATCGAGAAGCACATGAGGCAGCTTTATTCAAGCAAAGAGAAGATTTACACGAGTGGGAGAGGCAACTGCAAAGAAAGGAAGAGAAGTTGGGT GATCTCCGAAGAGAACTCAACCAGAGAGAGGAAAAGGCGGGTGAAGGTGAGGCGAACCTGAAGCAGCAAGAGGTTGACGTGGAAGAAATGAAAAAGAAGA TTGATCTATCATTTGAAAAGTTGAAGGAGAGGGAAGTTGATGTTGATAATCAATTAGCAGATTTGGCTGTAAAAGAGAAGAGTGCTGAATCTCAGAGAAG TTCCCTGGAGAGGAAGGAGAAAGAGTTGCAGATGTGGGAAGATAAACTTACTGCTAGAGAACAAGTGGATATTCTAGATATTGTTGATGGGCATAGGGCC ACTTTAGATGCTCAAATGCAGGAGCTGGAGCTGGAATTGGAGCAGAGAAGGAAAAGTCTCGATGAGGAACTTAGAAGCAAGAAAGAAAAGGTGGAAAAAC TTGAAGCTGAAATTCTCCACAGGGAAGAAATGTTGGGAAAGAAAGAAGAAGCTCTAAACAAGAAAGCTGAGAGAGTGAAGGAGAGGGAGAAGAACCTTGA TGCAAAGTTGAAAATGGTAAAGGAAAGAGAGAAAAGTTTGAAAGCAGAGCAGAGGAAGTTGGAGCTTGAGAAACGCCAATTACTTGCTGATAAAGAAAGC AACCAAAATCTCAAAGATGAATTTGAGAGGATAAAAACTGAAATTTCTCAGCAGGAACAGGAGATTGGTGAAAGTAGTGAAGGCCTTAAAATAATTAATG AGGAAAGGTTAGAATTCCTCCGTCTGCGTGAAGAACTAAAGAGTGAGAGAGAGAAGTGTCGACATCAGGAAGAGTTCCTTATAAAAGAAGGGGAAGAAAT GAATTTGGAAAGAGAGAGTTTCCGGAAGGAGATGGAGCTGCTAGAAGGAAAGAGAACTCAGATCGAGAAAGAACAGAAAGAAATTGCTGAGGAGAGGGAG AGACTAGAAAAGATTCGTCATGTTGAAGTAGAAAGGCTTAAGAAAGAAGAAGACACGATAAAGGAGCATGTCACAAGAGAACTGGAGACTCTAAGGGTTG AAAAAGAAGCATTTGAAGCCAGACTAAGGCATGAACAGTCACTTTTATTTGAAAAACACCAAATGGAGCATGATCTTGTCGTACAAGAATTGGAATCACA GAGAAGAAATTTGGATGTGTTGCTGATAAGTAAGAAGGAGGAAATGGAGAAATCCTTTCAGGAGAAGGAAAGCGCATTTCAGGAACTGAAGGCTAAAGAA CTTACGAATATTGAACACTTGAAAGAGATGGCCCAGAAAGAATTTGAACAAATTCAGTCTGAAAAGCAGACATTGGAGAAAGAAAAAATAGAGATTCTCA AAGACAAGGAAGATTTTGGACGCCAACAGACTGGGGTGCTGAAAGACATTTCTGAACTTGAATCCCTTAGCAGGAAGCTCAGGGATCAGAGGGAACAGGT TATGAGAGAAAGGAATAACTTCCTTGCATTTGCCGAGAAATGTAAGAATTGCAAGAACTGCAGAGACATTGCTGGAGCATTTGTGCTCTCTGATCTCCAG CCTCCTGAAATTGAGGTTATCACGCTTCCTAGGCTAGGTGATGAAATGATAGGAAATCAAGGCCATGTCAATGTGCCTGGTGCCTCCAGTGTCCAGAATA ACCTGCAAAAGCATGAGATGGGACAAAGTAGTCCTCTGGGGCCAATCTCTTTTCTCCGTAAATGCACCCCAAAGATTTTCTCTCCAATGAAAAGAATGGT CTCTCCTTCCAGCTTGGCAGGTGCGTCTACCTCTTCTCCCGGAAACGTCAATATCAGTGGACAAACAGAGAGATCTGGTATGGTTGTTGCAGAAGAAGCT AGATTGACTTCCATTCCTGACGATCAACCACAAGCATCCTTTGGTGCTGGTCACCAGCATCAAACTGAAGCTAGTAACCGTGATGGAGATGAGGGACCTT GTTTATCTGTTGATGATCATAGTTATATCGACAGCAAGGTAGAGGAATTTCCCGAAGATTCTGAGCAATCAGTATTGAAGAGCATGGAGCGCAGACGTGG GAGGAGACGTAAGACTGGTATAAATAGAACCCGTTCAGTGAAGACTGTGGTTGAGGAAGCAAAGAAGTTTCTCGGGGAAAGCCATGGGGAGCGAGAGCAC AACTTGAATGAACAGCCTGACGACCTGTATGCTCCAAGTGATGACAGTCGAGGTATTTCCAGTCGGGGAGGAAAGGCACCTAGCAATGTTGCTAGGAAAA GGCAGCGGGCTCCTTCAGAAAGCCAGCAGGATGTTTCTGATAGTGAGGGTGGATCTGTTAGTGTAACTGCTGGTGGGCGCAGGAAGAGGCGGCAAACAGT CACCTCAGTTACATCCACACCGGTCCAAACACGGTACAATCTTAGACGTAATAAGAATGCTGCGGTGAACTCAGCTGTACAAGCGTTGCCTGTGTTCGCG AAGAACCACTGGAAAGAAGCTAATGCTGGTGCAGCTACTGCTGTCGAACAACCATCAGTTGGAGCTGCGGATGAACCTCATAAGTCTATTAACTCAATGC AGGTTACAGCACATAAAAATGCTGAGACATCGGACTCGGAGAACAAGATGAAAGCTCCAGATGTTAATGAGCAAGTGGATGTAGCGAAGTCTGTCCAAAT TGTAGAGTTGAGTGAGGAAGTAATTGGTACGACGGAATATATGAAGGAGGAGGATGGCAGTACAATTCACGAGGAGGATGATGAAGCTGAAGATGACAAT GAGAATGAAGAATCTGAGCATCCTGCTCAAGCTTCTATAGGAAAAAAAATCTGGACCTTTTTCACTACTTGA
AA sequence Show only first row Show all	>Lus10034383 pacid=23175849 polypeptide=Lus10034383 locus=Lus10034383.g ID=Lus10034383.BGIv1.0 annot-version=v1.0 MLPRRGLLPGKSRPSPAVTLNPRSEAHNGVGSSNAATSNPRSVGKGKAVAFVDGPSLPPPHPPPTGLLSDSDMATEDEDFEAWRRGREVGLLDEAVMERK DREALMEKASALEKELFDYQYNMGMLLIEKKEWTAKLEELRQAVEEAQEILKRDQSTHLIALSEMERREQSLREALRVEQQCVADLEKALHQLKDEHVRV KHASETKLADAEALVAGIEGKSVAVKENMHTVEEKLSEVNQKSLELDLKLQEVEARETSIQRERLSLHTDREAHEAALFKQREDLHEWERQLQRKEEKLG DLRRELNQREEKAGEGEANLKQQEVDVEEMKKKIDLSFEKLKEREVDVDNQLADLAVKEKSAESQRSSLERKEKELQMWEDKLTAREQVDILDIVDGHRA TLDAQMQELELELEQRRKSLDEELRSKKEKVEKLEAEILHREEMLGKKEEALNKKAERVKEREKNLDAKLKMVKEREKSLKAEQRKLELEKRQLLADKES NQNLKDEFERIKTEISQQEQEIGESSEGLKIINEERLEFLRLREELKSEREKCRHQEEFLIKEGEEMNLERESFRKEMELLEGKRTQIEKEQKEIAEERE RLEKIRHVEVERLKKEEDTIKEHVTRELETLRVEKEAFEARLRHEQSLLFEKHQMEHDLVVQELESQRRNLDVLLISKKEEMEKSFQEKESAFQELKAKE LTNIEHLKEMAQKEFEQIQSEKQTLEKEKIEILKDKEDFGRQQTGVLKDISELESLSRKLRDQREQVMRERNNFLAFAEKCKNCKNCRDIAGAFVLSDLQ PPEIEVITLPRLGDEMIGNQGHVNVPGASSVQNNLQKHEMGQSSPLGPISFLRKCTPKIFSPMKRMVSPSSLAGASTSSPGNVNISGQTERSGMVVAEEA RLTSIPDDQPQASFGAGHQHQTEASNRDGDEGPCLSVDDHSYIDSKVEEFPEDSEQSVLKSMERRRGRRRKTGINRTRSVKTVVEEAKKFLGESHGEREH NLNEQPDDLYAPSDDSRGISSRGGKAPSNVARKRQRAPSESQQDVSDSEGGSVSVTAGGRRKRRQTVTSVTSTPVQTRYNLRRNKNAAVNSAVQALPVFA KNHWKEANAGAATAVEQPSVGAADEPHKSINSMQVTAHKNAETSDSENKMKAPDVNEQVDVAKSVQIVELSEEVIGTTEYMKEEDGSTIHEEDDEAEDDN ENEESEHPAQASIGKKIWTFFTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034383 [exp]	0	1
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	3.0	0.9157
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10014912 [exp]	7.7	0.8416
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	9.4	0.8877
AT5G57370			unknown protein		Lus10006974 [exp]	10.5	0.8455
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10023400 [exp]	11.0	0.8454
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	14.2	0.8487
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037744 [exp]	14.5	0.8353
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10027873 [exp]	15.1	0.8707
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10008215 [exp]	16.7	0.8382
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	18.0	0.8617

Compare expression of checked genes

Lus10034383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.