Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25640 196 / 8e-62 Protein of unknown function, DUF617 (.1) AT5G23100 176 / 5e-54 Protein of unknown function, DUF617 (.1) AT2G41660 145 / 8e-42 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT5G06990 132 / 3e-37 Protein of unknown function, DUF617 (.1) AT2G21990 132 / 5e-37 Protein of unknown function, DUF617 (.1) AT4G39610 130 / 3e-36 Protein of unknown function, DUF617 (.1) AT5G42680 121 / 5e-33 Protein of unknown function, DUF617 (.1.2) AT2G37880 114 / 2e-30 Protein of unknown function, DUF617 (.1) AT1G21050 102 / 6e-26 Protein of unknown function, DUF617 (.1) AT1G76610 100 / 5e-25 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019166 [exp] 321 / 6e-111 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 168 / 8e-51 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 166 / 6e-50 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 164 / 3e-49 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 155 / 1e-45 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 154 / 6e-45 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 128 / 9e-35 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 128 / 1e-34 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10021759 [exp] 119 / 4e-32 AT5G42680 254 / 3e-85 Protein of unknown function, DUF617 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G131600 [exp] 216 / 7e-70 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 208 / 2e-66 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 198 / 6e-63 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 193 / 5e-61 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 150 / 5e-44 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 140 / 3e-40 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 130 / 2e-36 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 128 / 1e-35 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 125 / 1e-34 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.014G035000 [exp] 123 / 6e-34 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10034386 pacid=23175952 polypeptide=Lus10034386 locus=Lus10034386.g ID=Lus10034386.BGIv1.0 annot-version=v1.0 ATGACGACAAATACAATCATGACCGCCAAGTCTTCCCACGACTCCTCTTTCTCCTTATCCAAACGCTACTTCAACAACTGGACCAAGAAGAAGATCCTCC TCCAACCCCAACATGACGGCGCCATCACAACAACATTCACAGAGGAAGAAGAAGGAGAAGATCAAATCATCCTCACTAACCTCCGCTCCTCTTCTCAGCA CTACACTCCTTCCAACTACGACCTCCCAGATCCCCACCCTTACCCAAAAACCAAGAAGAACAATAATCTCTCCACCAAGCTCAGATTAGCCCTCACTGTT TTCGGCGGCTGTCGGAGTTCGGGGCAGAGAACCAAAGTGGTGGGGACTCTGTTCGGGTACCGGAGGGGGCATGTCCGGTTCGCGTTTCAGGAGGATCCGA GGCAGAGGCCGGCGTTCCTGATCGAGATGGCGACTCCGACGAGCGTGCTCGTGAGGGAGATGGCATCCGGGCTGGTGAGGATCGCGCTGGAGTGTGATGA TAAGAAGGAGAAGAAGAAGAAGGTGAAGCTGGTGGAGGAAGGGATGTGGAGGAGCTACTGTAATGGGAAGAAATGCGGGTACGCGGTGAGGAGGGAGTGC GGAGAGGAGGAGTGGAGGGTTCTCAAGGCGGTGGGCCCCATCTCTATGGGTGCCGGAGTGTTGCCGGCGGTGGCGGAGGAGGAATTAGTTGAAGGTGGGG GAGATGATCATGGGGAGCTGATGTATATGAGGGCGAGGTTTGAGAGGGTGGTTGGTTCAAAGGATTCTGAAGCGTTTTACATGATGACTCCTGATGGATC TGGTGGCCCTGAGCTCAGTCTCTACTTGCTTAGAGTTTAG
AA sequence Show only first row Show all	>Lus10034386 pacid=23175952 polypeptide=Lus10034386 locus=Lus10034386.g ID=Lus10034386.BGIv1.0 annot-version=v1.0 MTTNTIMTAKSSHDSSFSLSKRYFNNWTKKKILLQPQHDGAITTTFTEEEEGEDQIILTNLRSSSQHYTPSNYDLPDPHPYPKTKKNNNLSTKLRLALTV FGGCRSSGQRTKVVGTLFGYRRGHVRFAFQEDPRQRPAFLIEMATPTSVLVREMASGLVRIALECDDKKEKKKKVKLVEEGMWRSYCNGKKCGYAVRREC GEEEWRVLKAVGPISMGAGVLPAVAEEELVEGGGDDHGELMYMRARFERVVGSKDSEAFYMMTPDGSGGPELSLYLLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25640			Protein of unknown function, D...		Lus10034386 [exp]	0	1
AT2G14830			Regulator of Vps4 activity in ...		Lus10033703 [exp]	1.0	0.9700
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039559 [exp]	1.4	0.9612
AT4G02830			unknown protein		Lus10014664 [exp]	3.9	0.9538
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10031421 [exp]	9.5	0.9504
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020480 [exp]	10.5	0.9377
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10033412 [exp]	10.6	0.9496
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	11.4	0.9549
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	13.6	0.9538
AT5G49350			Glycine-rich protein family (....		Lus10016857 [exp]	13.8	0.9296
AT4G16640			Matrixin family protein (.1)		Lus10028955 [exp]	14.4	0.9347

Compare expression of checked genes

Lus10034386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.