Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25620 734 / 0 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT1G31770 646 / 0 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT4G27420 584 / 0 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT5G06530 511 / 2e-172 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 506 / 4e-170 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G71960 502 / 6e-170 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT3G13220 454 / 5e-151 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT2G01320 246 / 3e-71 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G21090 224 / 9e-64 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT3G55100 218 / 1e-61 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034775 [exp] 652 / 0 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 645 / 0 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 634 / 0 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 633 / 0 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10025596 [exp] 579 / 0 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10025597 [exp] 564 / 0 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10029635 [exp] 562 / 0 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10028704 [exp] 493 / 2e-166 AT1G71960 818 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Lus10015994 [exp] 491 / 4e-166 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G131900 [exp] 840 / 0 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.004G236500 [exp] 653 / 0 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 624 / 0 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.001G404000 [exp] 580 / 0 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 557 / 0 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.019G083000 [exp] 516 / 3e-175 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.016G065900 [exp] 517 / 7e-175 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.013G111900 [exp] 512 / 5e-174 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.006G199500 [exp] 473 / 2e-157 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.001G370600 [exp] 459 / 6e-153 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10034387 pacid=23175879 polypeptide=Lus10034387 locus=Lus10034387.g ID=Lus10034387.BGIv1.0 annot-version=v1.0 ATGATGCCCCCCCAGCAGGAAATGACAATCACCCCACCCAATATCGGTCCAACTGCTATCCGGTCCGACCCCTTCTTGGTTCATGCTGAACCTGGTTCCA ATCCCTCAATCAACCACGATCAAGGATCGTCGCACAATTTGCCAAAATTTGCTCTTCTTCCCCCCATAACACTCAAGTTCGAAGATGTTGGATACAGTGT CAATTTTCCGCCAACCAAACCAAAGTCGACCCGACCCATTCTCAACGGAGTAACCGGAATGGTCCAACCAGGCGAGCTGCTAGCAATGCTCGGCCCATCG GGCAGCGGCAAGACTACCCTTTTAACCGCTCTGGCCGGAAGACTCCCCGGAAAAATCACCGGCGCCATAACTTACAATTCCTCCCCATTCTCAACTTCAA TCAAGCGCCGAATCGGATTCGTCACTCAGGAAGACGTACTGTACCCGCACCTCACTGTGATCGAGACGCTAACGTACGCCGCCCTGCTCCGGCTGCCGAA AACCCTCACCCGAGAGGAGAAATCGGGGCAGGCGGAGGCGATCCTGGAGGAGCTGGGGCTTGATCGGTGCCGGGACACGATCGTTGGCTGCGGCGGCGGC GGGTCTCCAATTCGCGGGGTTTCCGGTGGTGAGAGGAAACGGGTCAGTATCGGGCAGGAAATGCTCGTGAACCCGAGCCTGCTGTTGCTTGACGAACCGA CTTCGGGGCTGGACTCCACAACGGCGCAGAGGATTATGTCGACCGTAAGAGCGATGGCGCGCGGCGGCCGGACGGTGGTGACGACGATTCACCAGCCGTC GAGCAGGCTTTATACGATGTTCGACAAGGTTGTGGTATTGTCGGACGGGTACCCGATTTACAGCGGGCGTGCGGATCGGGTGATGGAGTATTTCGGGTCG GTTGGGTTCGGGCCGAATATGAGCTTCGTGAATCCAGCTGATTTCCTTCTAGACCTTGCCAATGATTGCAGTATTGTTCCTGATGTACACATCGTCAGAA TTGTTCAGGATTCAATAACAACTGATTTCCTGAGTGAATGTGTAGGTATAGTTCATGATGCGAACCAAGATGGCCCATCTGATCATCACAGCAAGCTAGA CCACCAAGAAGATCACAGCTCAGTAAAACAACAACTGGTATCATCTTACGGGAAGAACTTGCACCCTGCATTAAAACTCGAAATCAGTACTGTTTCTCAG GATTCTGCTCCGTTCGCGCCCTCTTTGCTAACGAGTACTAATGGTTGTAAATGGACAACCACCTGGTGGCAGCAATTTAAGGTCCTTTCCGGAAGAGGGT TACGAGAAAGGAAGCATGAATCCTATTCCGGCTTAAGGATTTTCCAAGTCTTGGCTGTTGCACTTCTCTCAGGTCTCCTATGGTGGCATTCAGACACCTC ACATATTCAAGATCAGGTGGGACTCCTCTTCTTCTTCTCAATCTTTTGGGGGTTCTTCCCAATGTTCAATGCCATATTCACATTCCCCCAGGAACAGCCG ATGCTAATCAAAGAACGTTCATCAGGAATGTACCGCCTTTCCTCCTACTATTTCGCTAGGATAGCCGGTGACCTGCCTATGGAGCTCGTCCTCCCCACGA TTTTCGTAACAATTGCTTACTGGATGGGAGGCCTCAAGCCATCCTTACCGGCTTTCGTGCTAACCCTCTCCGTAATCCTTCTCAGCGTGCTGGTCTCTCA AAGTCTTGGCCTAGCCATTGGCGCGATTCTGATGGAAGTCAAGCAGGCCACTGTACTTTCGTCCGTGACAATGCTGGTGTTTCTCTTGGCTGGAGGCTAC TACATTCAGCACATCCCGCCTTTCATCTCATGGATCAAATACGTATCGTTTAGCCACTACTGTTACAAGCTGCTGGTGAGGGTTCAGTATTCGGAGAACG AGGTTTACCAATGCGAGCCAAATGGAAGGCGTTGCAGGGTGATGGATTTCGAAGCGATTAAGTGTCTGGGATTGGAAAATGTGTGGTGGGATGTAGCTGC TTTGGTTGTGATGCTGGTAGGGTACAGAGTTTTGGCTTATGTTGCACTAAGAATTAGGCTGCCTCACTGA
AA sequence Show only first row Show all	>Lus10034387 pacid=23175879 polypeptide=Lus10034387 locus=Lus10034387.g ID=Lus10034387.BGIv1.0 annot-version=v1.0 MMPPQQEMTITPPNIGPTAIRSDPFLVHAEPGSNPSINHDQGSSHNLPKFALLPPITLKFEDVGYSVNFPPTKPKSTRPILNGVTGMVQPGELLAMLGPS GSGKTTLLTALAGRLPGKITGAITYNSSPFSTSIKRRIGFVTQEDVLYPHLTVIETLTYAALLRLPKTLTREEKSGQAEAILEELGLDRCRDTIVGCGGG GSPIRGVSGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQRIMSTVRAMARGGRTVVTTIHQPSSRLYTMFDKVVVLSDGYPIYSGRADRVMEYFGS VGFGPNMSFVNPADFLLDLANDCSIVPDVHIVRIVQDSITTDFLSECVGIVHDANQDGPSDHHSKLDHQEDHSSVKQQLVSSYGKNLHPALKLEISTVSQ DSAPFAPSLLTSTNGCKWTTTWWQQFKVLSGRGLRERKHESYSGLRIFQVLAVALLSGLLWWHSDTSHIQDQVGLLFFFSIFWGFFPMFNAIFTFPQEQP MLIKERSSGMYRLSSYYFARIAGDLPMELVLPTIFVTIAYWMGGLKPSLPAFVLTLSVILLSVLVSQSLGLAIGAILMEVKQATVLSSVTMLVFLLAGGY YIQHIPPFISWIKYVSFSHYCYKLLVRVQYSENEVYQCEPNGRRCRVMDFEAIKCLGLENVWWDVAALVVMLVGYRVLAYVALRIRLPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	0	1
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031871 [exp]	1.0	0.8823
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	2.4	0.8456
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	2.8	0.8487
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10041206 [exp]	4.0	0.8355
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040255 [exp]	6.0	0.8059
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	9.8	0.7865
AT2G34510			Protein of unknown function, D...		Lus10038495 [exp]	10.0	0.8135
AT4G39610			Protein of unknown function, D...		Lus10036630 [exp]	10.4	0.7964
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	11.0	0.7991
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10008651 [exp]	11.1	0.7541

Compare expression of checked genes

Lus10034387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.