Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034389 [exp] 87 / 1e-21 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034388 pacid=23175837 polypeptide=Lus10034388 locus=Lus10034388.g ID=Lus10034388.BGIv1.0 annot-version=v1.0 ATGAGAAACAGAGTATCCTGCTTCTGCAGCTTACTTGTTATCACCATCATAGTGGCCACGTTATCACCTTCGCTGGCTGCCAGACACTTAGAAGAAGAGG ATCTGGGGACAGGAGGAGTGGAGAATAATGGAGGAAGCAAAGGGCAAATGCTTGGAAGCGACGATTCAAGAAACTATGGATCAGCAGGAGAGAAAAATCA CCCTAATCCCAAGCAGCCAGGAGATAAAAAACACGTGATCAACGTTCCACCTAGCCCAACTACAAGTACTAATAATAACATGGAACAAAACTCTCCAGGA GAGAACAACAGTCCCCCTAATAATTTCCAGCAGTTACAAGATGAATCAAACATCAACGCTCCACCACCTTGCTCATGCACAGAAGAAAATTCATCTCCTG ATCCAGTGGATGACACAACTAGTACTTCAACCTCGTCGTCCTCCCAAGTTATAACCTATCCTGATTATCCTTCTCCTCCTCCTCCTCCTCCTCTTCTTCT TCCTCGTCCTCGTCCGGCCTACTACTCTTCATCCACCGGGACCACCACGCCTCGTGAATACTACTACGTATACCGTACTACTAATCCTAACCCTACCGGT TATCAGCGTTCCGGATATTATTACCGGACTCCTATGAGGACTGCTTGCCCTCTTTACACTAGGTGCTAG
AA sequence Show only first row Show all	>Lus10034388 pacid=23175837 polypeptide=Lus10034388 locus=Lus10034388.g ID=Lus10034388.BGIv1.0 annot-version=v1.0 MRNRVSCFCSLLVITIIVATLSPSLAARHLEEEDLGTGGVENNGGSKGQMLGSDDSRNYGSAGEKNHPNPKQPGDKKHVINVPPSPTTSTNNNMEQNSPG ENNSPPNNFQQLQDESNINAPPPCSCTEENSSPDPVDDTTSTSTSSSSQVITYPDYPSPPPPPPLLLPRPRPAYYSSSTGTTTPREYYYVYRTTNPNPTG YQRSGYYYRTPMRTACPLYTRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034388 [exp]	0	1
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	1.0	0.9477
AT2G42005			Transmembrane amino acid trans...		Lus10013835 [exp]	1.4	0.9408
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10020687 [exp]	6.9	0.9210
AT5G18470			Curculin-like (mannose-binding...		Lus10004765 [exp]	10.1	0.8732
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	11.4	0.9273
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	13.3	0.9222
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10021802 [exp]	13.5	0.8868
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10015483 [exp]	14.7	0.7758
					Lus10019564 [exp]	15.7	0.9304
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10040034 [exp]	16.4	0.7416

Compare expression of checked genes

Lus10034388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.