Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034388 [exp] 62 / 3e-12 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034389 pacid=23176084 polypeptide=Lus10034389 locus=Lus10034389.g ID=Lus10034389.BGIv1.0 annot-version=v1.0 ATGTCCTCTGTCTCCAGCTTACTTGTTATCATCATCATAGTGGCTCTGTTATCGCCTTCTCAGCTGGCCGCCAGACGCTTAATAGAAGACCATCAAGAGG ATCAGGGGACAGAAGGAGTACTGGACGATAATGGAGGAAGCAAAGGGCAAGCGCATGGAAGCGACTCAAGAAACTCTGGATCAGCAGGAGAGAACCCTAA TCCCAAGCAGCCAGGAGATAATGAACAAGTCATCAACAACAGTATTCCATCATCTGCAAATAATAATAACAATAATAATAATAATAATGTGGAACAAACG TCGGGATCACAAGCAGAGACCCAGCAGTCGTCAGAAGATGAATACTACTACTCTTCATCCACCAGGACCACCACGTCTCGTGAATACTACTACTACGCAT ACACTACTGCTCCGAATTCTACTACAACTTCTGCTTGCCCTATGTATCTTAGGTGCTAG
AA sequence Show only first row Show all	>Lus10034389 pacid=23176084 polypeptide=Lus10034389 locus=Lus10034389.g ID=Lus10034389.BGIv1.0 annot-version=v1.0 MSSVSSLLVIIIIVALLSPSQLAARRLIEDHQEDQGTEGVLDDNGGSKGQAHGSDSRNSGSAGENPNPKQPGDNEQVINNSIPSSANNNNNNNNNNVEQT SGSQAETQQSSEDEYYYSSSTRTTTSREYYYYAYTTAPNSTTTSACPMYLRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034389 [exp]	0	1
AT2G39440			unknown protein		Lus10018300 [exp]	2.6	0.9509
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026779 [exp]	2.8	0.9332
AT4G15690			Thioredoxin superfamily protei...		Lus10002887 [exp]	4.9	0.9317
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016227 [exp]	6.3	0.8916
AT2G23970			Class I glutamine amidotransfe...		Lus10019964 [exp]	6.3	0.9459
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	7.7	0.9222
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	8.9	0.9299
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006306 [exp]	9.0	0.9234
AT5G36930			Disease resistance protein (TI...		Lus10010987 [exp]	9.5	0.9394
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	13.6	0.9319

Compare expression of checked genes

Lus10034389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.