Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14790 85 / 1e-20 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT3G49500 50 / 3e-08 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT4G11130 50 / 3e-08 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019164 [exp] 177 / 5e-53 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10002361 [exp] 59 / 2e-11 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10042134 [exp] 58 / 4e-11 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002017 [exp] 45 / 1e-06 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002910 [exp] 43 / 1e-05 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136100 [exp] 136 / 7e-39 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G105200 [exp] 111 / 6e-30 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 110 / 1e-29 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G135800 [exp] 103 / 5e-27 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.015G073700 [exp] 57 / 1e-10 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.006G253500 [exp] 45 / 1e-06 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.018G028100 [exp] 40 / 5e-05 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034391 pacid=23176098 polypeptide=Lus10034391 locus=Lus10034391.g ID=Lus10034391.BGIv1.0 annot-version=v1.0 ATGGCGGTAGGATCGTTGAAGAAAGAAGCAAGGTCGTGGTTCAATGAGAAGGGGAGTAATTTGGATGCAGAAGATGATGATGATGTGCATGCCAAAGCAT CTGCTTGGTACCATGTTACGTATCATCCGGACTACTGGGGTCAGTACAACGAGGGAATGAACATGCCTCAGTTTTTGAGCTTTCCGTGGTGTGTATATGA CAAACTGATCCAGATTAAGAAGAATAAGAGGAAGATGGCAGCTCGAATGTCATCGCTGGAACAACAGTTTCAGCTTGGATTGCGGTTAAGCTAG
AA sequence Show only first row Show all	>Lus10034391 pacid=23176098 polypeptide=Lus10034391 locus=Lus10034391.g ID=Lus10034391.BGIv1.0 annot-version=v1.0 MAVGSLKKEARSWFNEKGSNLDAEDDDDVHAKASAWYHVTYHPDYWGQYNEGMNMPQFLSFPWCVYDKLIQIKKNKRKMAARMSSLEQQFQLGLRLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034391 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10037731 [exp]	1.4	0.9389
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034390 [exp]	2.4	0.9163
					Lus10012544 [exp]	3.9	0.8916
AT1G71150			unknown protein		Lus10007946 [exp]	4.2	0.8641
AT4G27220			NB-ARC domain-containing disea...		Lus10008516 [exp]	4.6	0.8559
AT5G57910			unknown protein		Lus10035808 [exp]	5.7	0.8298
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10026650 [exp]	6.8	0.8009
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	8.0	0.8508
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	8.5	0.8831
AT1G65810			P-loop containing nucleoside t...		Lus10037353 [exp]	11.0	0.8405

Compare expression of checked genes

Lus10034391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.