Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49550 139 / 1e-43 BLOS2 BLOC subunit 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019163 [exp] 170 / 4e-56 AT5G49550 103 / 7e-30 BLOC subunit 2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106200 [exp] 149 / 2e-47 AT5G49550 155 / 9e-50 BLOC subunit 2, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10046 [flax] [poplar] BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2
Representative CDS sequence Show only first row Show all	>Lus10034392 pacid=23176060 polypeptide=Lus10034392 locus=Lus10034392.g ID=Lus10034392.BGIv1.0 annot-version=v1.0 ATGGCAACTGGAAGGGAGGAACAACAAGAAGCGAATGATGAGCTTTCTGACTCCATAAACGATCTCTTCATTAGCATCACATCAATGGTGAAGGGAGAGC TTCAGGGCACAAATAACGTATTGGCGCTTCTGGATAAGATGAACTTAAGAGTGGCTGAAGAGTATAGCAGCTTCGGCGATGTTGCTTCAGGGCTAACAGC GTTCGTTGAGCAGTTAAAGTCGAAAAGTGGTAGCTTTGACGAGTATGTAGAACAAATCGATGCGATAGAGCAACAGGTTACCGAGTTTGAAGCTGTGATC TCTATGCTTGATAAGTATGTTTCTTTGTTAGAATCTAAAGTACAGTCTGTGTACCAGCAACAATCATCTGCTTCATAA
AA sequence Show only first row Show all	>Lus10034392 pacid=23176060 polypeptide=Lus10034392 locus=Lus10034392.g ID=Lus10034392.BGIv1.0 annot-version=v1.0 MATGREEQQEANDELSDSINDLFISITSMVKGELQGTNNVLALLDKMNLRVAEEYSSFGDVASGLTAFVEQLKSKSGSFDEYVEQIDAIEQQVTEFEAVI SMLDKYVSLLESKVQSVYQQQSSAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49550		BLOS2	BLOC subunit 2, unknown protei...		Lus10034392 [exp]	0	1
AT2G45620			Nucleotidyltransferase family ...		Lus10009310 [exp]	11.3	0.7811
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10017097 [exp]	18.9	0.7862
AT4G25030			unknown protein		Lus10033276 [exp]	29.1	0.7341
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10033946 [exp]	34.9	0.7176
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10017321 [exp]	43.1	0.7285
AT3G19990			unknown protein		Lus10017359 [exp]	50.4	0.7308
AT4G29660		EMB2752	embryo defective 2752 (.1)		Lus10032908 [exp]	54.1	0.6339
AT3G47610			transcription regulators;zinc ...		Lus10024226 [exp]	72.2	0.6951
AT2G28370			Uncharacterised protein family...		Lus10021469 [exp]	72.4	0.7132
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10031022 [exp]	82.3	0.7156

Compare expression of checked genes

Lus10034392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.