Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47430 141 / 1e-36 DWNN domain, a CCHC-type zinc finger (.1.2.3) AT4G17410 137 / 3e-35 DWNN domain, a CCHC-type zinc finger (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029205 [exp] 345 / 3e-117 AT5G47430 175 / 2e-48 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10021702 [exp] 212 / 2e-65 AT4G17410 140 / 1e-36 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10035046 [exp] 112 / 8e-30 ND 40 / 2e-04 Lus10004741 [exp] 120 / 2e-29 AT5G47430 648 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10007803 [exp] 108 / 1e-25 AT5G47430 517 / 2e-175 DWNN domain, a CCHC-type zinc finger (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G078800 [exp] 150 / 1e-39 AT5G47430 635 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.001G156000 [exp] 148 / 5e-39 AT5G47430 620 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.013G112200 [exp] 106 / 2e-25 AT5G47430 260 / 1e-78 DWNN domain, a CCHC-type zinc finger (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0072 [flax] [poplar] Ubiquitin PF08783 [flax] [poplar] DWNN DWNN domain
Representative CDS sequence Show only first row Show all	>Lus10034393 pacid=23175841 polypeptide=Lus10034393 locus=Lus10034393.g ID=Lus10034393.BGIv1.0 annot-version=v1.0 ATGGCGACTACGACGGTGAGGTATAAGTTTCTGAGTGCTAAGGAATTTTCCGAGATCCGATTCCAAGGGTGTTACGTAACCGTTCAGGAACTGAGAGAGG GAATCCGCAACGCCAAATTCAAAGCTAAGTCCGGCGATCACAGTGGCCGTAATTTAAACGGATTGTGCCTGGGAAACGATTACGATCTTTCGATCATCGA CCCCAAGACCAACACTCCGTATTCCAACGAGTCGGCGAGGATCACCAACAACTCGTCCGTGCTACTCCGGCGCGTTCCAGGCGACCGGTATCGGCGATGT CTCAAAATTACGCCGATTCAAGTGAAGGAAGATGATTCAAGTTCCATTACGGCCACCAAGCCTAGCACCGTTGTTTCTCAGAACTCCAGCATCAGCAAGG CAGCAACGAAGGAGGAAATCGACGATCTGTATGACGATGATGAATTCGGTGGGGATGTCTACGCAATTCCTTCAAAAGTAGTACACGCGCCTCCGAAGCG CATTGATCAAGATGAGGAGAACACGAAGATCACTCTCACTCCTGCTTTGGGAAGCTGGTCACAAGGGGCGGCGTCGACACTCACCAGCAACAGCAGCACC GGCGGAGGATGGGACTCAAGAAAGAGAAAGCAACCTTGCTCCTCTCGCCCTCTTCCCGACGGCTACGTCTGCCGCCGCTGCCAAAAAGAGGGCCACTTCA TTCAGGACTGTCCGACGAATGGTGATCCAAATTACGACTTCAAGAGAATGCGAGCATCATCATATCCTGCTGCATCAACTCCCAGTGCAGCAGCAGTGGA GGGAATCTCATCGTCGATATCTCATTCCAGCAGCAGTAGTTATGCGGTGGTTGTGCCGCCAGAGCTTCATTGTCCACTATGCAGAGGAGTGATGAGAGAT GCCGTGTTGGTGAAGAGATGCTGCTTAAGGAGCTTCTGCGAAGGTTGCATCAGAGACCATGTGAAGAAATCGAAGTCGTGTGCTTGCGGAGCAAATGCTG ATGCTGGAGAGGGTGATTTTGTGCCTAATGTAGCTGTGAGAAAGATGATTAGTTCCATTTTGCAACGTTCAAGTTGCAGTGGCAGTGGTAGTGTGGGTAG CAATAGCTGTTCTACTGTTATTAGAATGTGA
AA sequence Show only first row Show all	>Lus10034393 pacid=23175841 polypeptide=Lus10034393 locus=Lus10034393.g ID=Lus10034393.BGIv1.0 annot-version=v1.0 MATTTVRYKFLSAKEFSEIRFQGCYVTVQELREGIRNAKFKAKSGDHSGRNLNGLCLGNDYDLSIIDPKTNTPYSNESARITNNSSVLLRRVPGDRYRRC LKITPIQVKEDDSSSITATKPSTVVSQNSSISKAATKEEIDDLYDDDEFGGDVYAIPSKVVHAPPKRIDQDEENTKITLTPALGSWSQGAASTLTSNSST GGGWDSRKRKQPCSSRPLPDGYVCRRCQKEGHFIQDCPTNGDPNYDFKRMRASSYPAASTPSAAAVEGISSSISHSSSSSYAVVVPPELHCPLCRGVMRD AVLVKRCCLRSFCEGCIRDHVKKSKSCACGANADAGEGDFVPNVAVRKMISSILQRSSCSGSGSVGSNSCSTVIRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10034393 [exp]	0	1
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10029205 [exp]	1.0	0.9136
AT5G42120			Concanavalin A-like lectin pro...		Lus10042795 [exp]	1.4	0.9052
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	1.7	0.9039
					Lus10018716 [exp]	3.7	0.8495
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	4.5	0.9014
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	6.3	0.8384
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10011244 [exp]	8.1	0.8932
AT5G42120			Concanavalin A-like lectin pro...		Lus10029769 [exp]	13.4	0.8305
AT5G53110			RING/U-box superfamily protein...		Lus10010123 [exp]	17.1	0.7533
					Lus10033722 [exp]	17.7	0.7790

Compare expression of checked genes

Lus10034393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.