Plant FIBer expression Database

Lus10034394 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60070 536 / 0 Major facilitator superfamily protein (.1)
AT2G44280 516 / 0 Major facilitator superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019162
[exp]
601 / 0 AT2G44280 399 / 7e-137 Major facilitator superfamily protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G232100
[exp]
576 / 0 AT3G60070 648 / 0.0 Major facilitator superfamily protein (.1)
Potri.009G024600
[exp]
573 / 0 AT2G44280 653 / 0.0 Major facilitator superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10034394 pacid=23176134 polypeptide=Lus10034394 locus=Lus10034394.g ID=Lus10034394.BGIv1.0 annot-version=v1.0
ATGGGTGACAATGAGATTGGGGATGAAGACGATCTTTCACATTATAAGTCCAATGGAGGAAGACGGTCGGTCTTCTTTTATGGTGTTGGCCACATGCTGA
ATGATATCACTTCTTCTTGCTGGTTTACTTATCTCTTATTGTTTTTGGCAGACATCGGATTGTCCCCGAGGGCTGCTGCAATGGTCATGCTCTCTGGACA
AGTTGCGGATGGATTTGCTACCGTATTTGTTGGGGAACTGATAGACAGGTTCGGTCACTTCAAAGTATGGCATGGTGCTGGGTCGGTTTTAGTTGCGGTT
TCATTTTCCTCTGTTTTTGGAGGTTGTTTACCATGCCGATTCTTCAGTACTGGCTCTGCAGTGGTGGAAACCATCTCATATAGTGTGTTTGCTGCAATCT
TTAATGTGGGCTGGGCTGCTACTCAAGTTTCGCACATTCTTTATGCAATTGCGTTGGTAGTGTTCAATATAATTAGAGGAAAGTCGCATGCTGATATTGA
GAATCAGTACCGATGGATTGCATACTCATCAATCTTTATCGGCTGTTGTTTCGTTGGAATATTTCATTTGGGAACCAAAGAGCCAAGGTTAAAGATGAAC
ATTTATGGGGATAGTCGCACGAGGATAGCATGGGCTTATTGGTTCAAGAAAGTTTTATACTATCAAGTTGGCGTTGTGTATGTACTTACCAGACTTGTAC
AGAATGTTTCACAGGCATACCTCGCTTTCTATGTGATCCAAGATTTGCACATGGGCCAGTCAGCTAAAGCTTTGGTTCCTGCAATCATCTACATCAGCAG
CTTTGTTGTCTCGATCATGATGCAGGAAGTATCATGGACTGGCCGGCGCCTAAAAGCATACTTTTCTATTGGTGGAATCCTTTGGGTTCTTTGTGGAGCA
ACTATCATTCTCTTACCTTGCAGGATGAGTGTTTTTATGTACATCATATCAGTATTTATTGGCATAGCAAACGCACTGATGATGGTAACTGCAGTAAGCA
TGCAAAGTGTCCTAGTGGGTTCAGATTTCAATGGTTCTGCGTTTGTGTGTGGATCCCTAAGCTTCCTTGACAAAATGTCATGTGGGATTGCACTTTACGC
TCTTCAGTCGTTTCAAAGTGAAGCCTCACCAGTAGCCCAAGCACCGGATAGCCTATCGTCTGCTTATATTTCAGTGACGAGATATGGTCTGGGACTGCTT
CCAGCCGTTTGTTCACTTCTAGGGGTTGGCGTGACGTTTACAATGAAACTCCACACACATTCAGAATCGTTGACACTGCCATTGTTAGAGTAA
AA sequence
>Lus10034394 pacid=23176134 polypeptide=Lus10034394 locus=Lus10034394.g ID=Lus10034394.BGIv1.0 annot-version=v1.0
MGDNEIGDEDDLSHYKSNGGRRSVFFYGVGHMLNDITSSCWFTYLLLFLADIGLSPRAAAMVMLSGQVADGFATVFVGELIDRFGHFKVWHGAGSVLVAV
SFSSVFGGCLPCRFFSTGSAVVETISYSVFAAIFNVGWAATQVSHILYAIALVVFNIIRGKSHADIENQYRWIAYSSIFIGCCFVGIFHLGTKEPRLKMN
IYGDSRTRIAWAYWFKKVLYYQVGVVYVLTRLVQNVSQAYLAFYVIQDLHMGQSAKALVPAIIYISSFVVSIMMQEVSWTGRRLKAYFSIGGILWVLCGA
TIILLPCRMSVFMYIISVFIGIANALMMVTAVSMQSVLVGSDFNGSAFVCGSLSFLDKMSCGIALYALQSFQSEASPVAQAPDSLSSAYISVTRYGLGLL
PAVCSLLGVGVTFTMKLHTHSESLTLPLLE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G60070 Major facilitator superfamily ... Lus10034394
[exp]
0 1
AT2G44280 Major facilitator superfamily ... Lus10019162
[exp]
1.0 0.8417
AT5G66320 GATA GATA5 GATA transcription factor 5 (.... Lus10031096
[exp]
2.0 0.7716
Lus10026843
[exp]
5.5 0.7307
AT2G17290 ATCPK6, ATCDPK3... calcium dependent protein kina... Lus10026559
[exp]
6.9 0.7488
AT1G71830 ATSERK1, SERK1 somatic embryogenesis receptor... Lus10006056
[exp]
7.9 0.7821
AT1G18890 CPK10, ATCDPK1,... calcium-dependent protein kina... Lus10036667
[exp]
9.7 0.7607
AT4G02920 unknown protein Lus10027996
[exp]
9.7 0.7918
AT5G64230 unknown protein Lus10033177
[exp]
16.8 0.7569
AT2G14910 unknown protein Lus10013888
[exp]
17.3 0.7557
AT5G39450 F-box family protein (.1) Lus10037697
[exp]
18.0 0.6545

Lus10034394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.