Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28510 422 / 3e-150 ATPHB1 prohibitin 1 (.1) AT1G03860 413 / 1e-146 ATPHB2 prohibitin 2 (.1.2.3) AT2G20530 410 / 1e-145 ATPHB6 prohibitin 6 (.1.2) AT5G44140 384 / 2e-135 ATPHB7 prohibitin 7 (.1) AT5G40770 269 / 3e-90 ATPHB3 prohibitin 3 (.1) AT3G27280 266 / 6e-89 ATPHB4 prohibitin 4 (.1.2) AT5G14300 217 / 3e-70 ATPHB5 prohibitin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019161 [exp] 504 / 0 AT4G28510 434 / 4e-155 prohibitin 1 (.1) Lus10042515 [exp] 455 / 2e-163 AT1G03860 433 / 9e-155 prohibitin 2 (.1.2.3) Lus10021978 [exp] 453 / 1e-162 AT1G03860 436 / 9e-156 prohibitin 2 (.1.2.3) Lus10032072 [exp] 265 / 2e-88 AT5G40770 486 / 7e-176 prohibitin 3 (.1) Lus10014604 [exp] 264 / 3e-88 AT5G40770 482 / 2e-174 prohibitin 3 (.1) Lus10035521 [exp] 166 / 1e-49 AT5G40770 221 / 1e-71 prohibitin 3 (.1) Lus10027776 [exp] 132 / 1e-37 AT5G40770 173 / 9e-54 prohibitin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G134700 [exp] 424 / 6e-151 AT4G28510 463 / 2e-166 prohibitin 1 (.1) Potri.017G017400 [exp] 418 / 1e-148 AT4G28510 457 / 5e-164 prohibitin 1 (.1) Potri.017G065800 [exp] 274 / 5e-92 AT5G40770 433 / 7e-155 prohibitin 3 (.1) Potri.001G335700 [exp] 271 / 8e-91 AT5G40770 429 / 3e-153 prohibitin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10034395 pacid=23176076 polypeptide=Lus10034395 locus=Lus10034395.g ID=Lus10034395.BGIv1.0 annot-version=v1.0 ATGAATGCCAAGAAGATTAATCAAGCCCCCGTAGGAACTCTGTTGGTCAAGATCGGAGTTGCCGCCGGGGTTGTTATTTACGCTGCTGCTAACAGTCTCT ACAATGTCGAAGGTGGCCACCGTGCGATCGTCTTCAACCGGTTTACTGGTGTAAAAAACAAGGTTTTTCCAGAAGGAACCCACTTCCTTTTCCCCTGGTT TGAGCGTCCGATCATCTATGACGTCCGCGCTCGACCTCACCTTGTGGATAGTACATCTGGAAGCCGTGATCTTCAAATGGTCAAGATTGGGCTCCGGGTT CTTACACGTCCCCAGGCTGACCAGTTGCCAACAATCTATAGAAATGTCGGTGTGAATTACAATGAGAGAGTGCTGCCTTCCATCATTCACGAAACACTGA AATCTGTGGTTGCACAGTACAATGCCAGCCAGCTCATCACTCAAAGAGAGGCTGTTAGTAGGGAGATAAGGAAGATTCTTACAGAGAGGGCAGCTTTTTT CAACATCGCTCTTGATGATGTGTCCATCACTAACCTGACATTTGGCAAAGAGTTCACTGCTGCAATTGAGTCAAAACAAGTGGCTGCTCAGGAGGCCGAG AGGGCCAAGTTCGTTGTGGAGAAGGCTGAACAGGACAAGAGGAGTGCTATTATCAGAGCCGAGGGTGAAGCCAAGAGTGCTCAGCTGATTGGACAAGCAA TTGCAAGCAATCCAGCTTTCATCACGCTGAGGAAGATAGAAGCTGCGAGAGATATCGCTCAAACCATGAAGAACTCGTCAAACAAGGTGTATCTGGACTC CAGTGATTTGCTGCTAAACCTGTCAGACATGGATATGCTGGCCGCTGGGAAGAATGTCGCTGTCTGA
AA sequence Show only first row Show all	>Lus10034395 pacid=23176076 polypeptide=Lus10034395 locus=Lus10034395.g ID=Lus10034395.BGIv1.0 annot-version=v1.0 MNAKKINQAPVGTLLVKIGVAAGVVIYAAANSLYNVEGGHRAIVFNRFTGVKNKVFPEGTHFLFPWFERPIIYDVRARPHLVDSTSGSRDLQMVKIGLRV LTRPQADQLPTIYRNVGVNYNERVLPSIIHETLKSVVAQYNASQLITQREAVSREIRKILTERAAFFNIALDDVSITNLTFGKEFTAAIESKQVAAQEAE RAKFVVEKAEQDKRSAIIRAEGEAKSAQLIGQAIASNPAFITLRKIEAARDIAQTMKNSSNKVYLDSSDLLLNLSDMDMLAAGKNVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10034395 [exp]	0	1
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	2.0	0.9711
AT2G41840			Ribosomal protein S5 family pr...		Lus10030130 [exp]	6.0	0.9567
AT3G66652			fip1 motif-containing protein ...		Lus10016905 [exp]	6.5	0.9494
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	7.1	0.9548
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10002851 [exp]	7.9	0.9490
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	10.6	0.9520
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10041999 [exp]	11.0	0.9488
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10043412 [exp]	11.7	0.9425
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10035786 [exp]	12.2	0.9497
AT1G09640			Translation elongation factor ...		Lus10002536 [exp]	13.5	0.9469

Compare expression of checked genes

Lus10034395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.