Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47360 405 / 3e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 152 / 5e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 146 / 1e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 145 / 2e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 144 / 3e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 142 / 1e-36 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 142 / 2e-36 RPF2 rna processing factor 2 (.1) AT1G05670 142 / 3e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G64583 140 / 3e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 140 / 7e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019160 [exp] 922 / 0 AT5G47360 407 / 8e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015397 [exp] 154 / 2e-41 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 157 / 4e-41 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 156 / 8e-41 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 153 / 7e-40 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 149 / 6e-39 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10030887 [exp] 147 / 6e-39 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 147 / 8e-39 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 141 / 5e-36 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154901 [exp] 540 / 0 AT5G47360 429 / 4e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 159 / 6e-42 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G057900 [exp] 151 / 2e-40 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 152 / 4e-40 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 152 / 6e-40 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 150 / 2e-39 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 150 / 3e-39 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 149 / 3e-39 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 149 / 3e-39 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242500 [exp] 149 / 4e-39 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034396 pacid=23175950 polypeptide=Lus10034396 locus=Lus10034396.g ID=Lus10034396.BGIv1.0 annot-version=v1.0 ATGTCCCTCTTTTCGGTTCCCCGTTTCCTTTCTTTCTCAATCTCCCCCGACACTTGCAAAATCTCCAGCTTGCGGTTCTACTCTTCTTTGGTTGACAAGC TCTATACTCACTTGCAAAACAATCCCAAGAATGCAGAAAGAGCTTTGAACTTAGTCAAGCCTAAATTGGATGCTGCATCTATCAATGAGGTTCTGCAGAG GTGCTCCCTGAACGATTCTCTGCTGGGTCTTAGGTTTTTTGTATGGGTTGGTTGTCAGTCAAGCTATAGACATAGTTCGTACATGTATAACAATGTCTGT CAGTTGTTTAGGGTCAGGGAAAACCCTCGAGTTGTTTTGGATTTAATCCAAGCTTACAAGGCAGAGGAATTCGCGGTGAATATCAAGACATTCAAAGTTG TTCTTAATTTGTGCAGAGAGGTCAAGCTTGCCAGTGAGGCTCTTTTCGTGTTGAGAAATATGCCTGCCTTTAATATACGTGCTGACACCAGTGCATATAA TATAGTTATTAGGTTGTTATGTGAGAAAGGTGACTTGGCTATGGCTGACAAACTAATGGGAGAGATGGGGTTGATTGATCTCTATCCCGATATGGTCACA TATGTAACAATGATCAAAGGTTTTTGTCATGTGGGTAGATTGGCAGAAGCTTCTGGTTTGTTAAAGGTGATGAAGAGAACTGGTTGTGCATCTAGCGTTG TGGTGTATTCGACTCTTCTGGATGGGATTTGCAAATACGGCAGTGTCGAACAGGCTTTAGAATTGTTAAGCCAAATGGAGAAAGAAGGTGGGAATTGTAC CCCAAATACTGTTACCTATACCTCGTTGATTCAAAGTTTATGTGAGAAGGGGGAGACGATTGCCGCAGTTTCCATTTTCGATAAAATGGTGGATTCTCGC CTGTCCCCTAATAGGGTGACAGTTAGTACCTTGCTCAAAGGCCTTTGTGCAGATGGTCATTTGGATGAGGCTTATAAATTGATTGATAGAGTATGCGTGG GAGGTTGGGTATCTTATGGTGAATGTTACAGCTCTCTTGTTTTGTGTTTATTGAGGATGGAGAAACTTGAGGAGGCAGAGAATGTTTTCAGAAGCCTTTT AGTAGGTGGGGGGAAACCGGACAGCCTGGCATGCAGTCTTATGATCAGGGATCTTGTTTCAAAGACAAGGATGCTTGATGCATTTCACTTGTATAACGAA ATTGAAAAATTTAGCGATTCGGTGACACTGGACTCTGATATCTACTCTATCTTATTGCTTGGGCTTTGCCAGCAAGGTCATTTTGCAGAAGCTACGAAAA TGGCTAGGTCGATTCGTGGAAAAGAAGTAGTGTGTCTACAATCTCCTCAGCTTCACAAACTAATTGAGCACATGGAGAAGTTTGAGGACAGAAACTAG
AA sequence Show only first row Show all	>Lus10034396 pacid=23175950 polypeptide=Lus10034396 locus=Lus10034396.g ID=Lus10034396.BGIv1.0 annot-version=v1.0 MSLFSVPRFLSFSISPDTCKISSLRFYSSLVDKLYTHLQNNPKNAERALNLVKPKLDAASINEVLQRCSLNDSLLGLRFFVWVGCQSSYRHSSYMYNNVC QLFRVRENPRVVLDLIQAYKAEEFAVNIKTFKVVLNLCREVKLASEALFVLRNMPAFNIRADTSAYNIVIRLLCEKGDLAMADKLMGEMGLIDLYPDMVT YVTMIKGFCHVGRLAEASGLLKVMKRTGCASSVVVYSTLLDGICKYGSVEQALELLSQMEKEGGNCTPNTVTYTSLIQSLCEKGETIAAVSIFDKMVDSR LSPNRVTVSTLLKGLCADGHLDEAYKLIDRVCVGGWVSYGECYSSLVLCLLRMEKLEEAENVFRSLLVGGGKPDSLACSLMIRDLVSKTRMLDAFHLYNE IEKFSDSVTLDSDIYSILLLGLCQQGHFAEATKMARSIRGKEVVCLQSPQLHKLIEHMEKFEDRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47360			Tetratricopeptide repeat (TPR)...		Lus10034396 [exp]	0	1
AT3G56830			Protein of unknown function (D...		Lus10030290 [exp]	7.5	0.7713
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	18.5	0.7704
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10040375 [exp]	26.2	0.7575
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	28.1	0.7496
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029258 [exp]	30.7	0.7387
AT1G67170			unknown protein		Lus10035371 [exp]	31.1	0.7314
AT2G30120			unknown protein		Lus10026389 [exp]	33.3	0.7414
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10005518 [exp]	35.8	0.7566
AT5G36930			Disease resistance protein (TI...		Lus10010574 [exp]	37.1	0.7068
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	40.3	0.7424

Compare expression of checked genes

Lus10034396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.