Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26230 221 / 1e-68 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT3G26330 215 / 3e-66 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26220 214 / 7e-66 CYP71B3 "cytochrome P450, family 71, subfamily B, polypeptide 3", cytochrome P450, family 71, subfamily B, polypeptide 3 (.1) AT3G26310 213 / 2e-65 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT2G24180 210 / 2e-64 CYP71B6 cytochrome p450 71b6 (.1) AT3G26320 210 / 2e-64 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT1G13110 209 / 5e-64 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT5G57260 207 / 2e-63 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26210 204 / 3e-62 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT1G13080 201 / 3e-62 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019159 [exp] 504 / 3e-179 AT3G26330 365 / 1e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10019157 [exp] 455 / 7e-160 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10009903 [exp] 395 / 4e-136 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10016601 [exp] 290 / 8e-95 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10030924 [exp] 284 / 1e-92 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10030708 [exp] 273 / 2e-88 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10004907 [exp] 270 / 5e-88 AT3G26330 330 / 2e-108 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10029035 [exp] 271 / 2e-87 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10010545 [exp] 269 / 2e-87 AT3G26330 321 / 8e-105 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 298 / 2e-98 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G131001 [exp] 269 / 9e-90 AT3G26230 230 / 4e-72 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.001G364900 [exp] 262 / 1e-86 AT3G26300 228 / 1e-70 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 266 / 3e-86 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 266 / 5e-86 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365366 [exp] 259 / 1e-85 AT3G26230 228 / 3e-71 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.007G074300 [exp] 262 / 3e-84 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 258 / 1e-82 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 257 / 2e-82 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 254 / 3e-81 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10034397 pacid=23176030 polypeptide=Lus10034397 locus=Lus10034397.g ID=Lus10034397.BGIv1.0 annot-version=v1.0 ATGGAAGCTGGAAGTGGATTCAGTATGCCCGATATGTTCCCTTCGTCTACATGGCTTCATGTATTCAGCGGGCTTGAGGGTAAATTGGTCAAGATTCGTC AGAGGACGGATAAGATACTTGGAAAAATCATTGATGAACATAGGCAAAACAAAAAGAGTAGCAGAAATTGTACGGATGAGCAAAAGGATCTTGTGGATGT TTTATTGTTGGCTCAGGAAGAAGGACAGATTGAATTCCCGTCCGGTGGCGATACTTGTCTCAAGTCCATAATCATGGAAATTTTTACGGCTGGAACAGAG ACGTCTTCCATGGCTGTTGAATGGGCAATGACAGAGTTGCTTCGAGATCAAAGAGTGTACGAAAAGGCACAATCTGAAGTAAGAAAAGTGTTCGGTGGAA AGGGAATGGTAACCGAAGAGGGAATCGAAGAATTAAAGTATCTGAAATTAGTAGTGAATGAAGCATTGAGATTACACCCTCCGGCACCACTGCTTCCAAG ACAAACCATAGAAGATATTAAGATTGAAGGCTATGATATTCCAGCAAATACCAAAGTCTTGGTGAACGTTTGGGCAATTGCAAGAGATCCCAAGTATTGG GTGGATCCTGAACGGTTTTGGCCTGAGAGGTTTATAGAAGCTTCGTCGGATTTCCACGGTACTGATTTTATGTTCATGCCGTTTGGTGTTGGGAGGAGGA TTTGTCCAGGTACAACATTTGGAATTGCAAACGTTGAGCTTCCCTTGGCTAGTTTGTTGTATCACTTTGACTGGAAAACTGGAGATGGATCACCACTTGC AGATTTGGACGCATCTGAATCTTCTGGTGCAACATTGATAAGGAAGCATGAACTCTGCTTGATTCCTGTTTGCCACCATAGTTCAAATTGA
AA sequence Show only first row Show all	>Lus10034397 pacid=23176030 polypeptide=Lus10034397 locus=Lus10034397.g ID=Lus10034397.BGIv1.0 annot-version=v1.0 MEAGSGFSMPDMFPSSTWLHVFSGLEGKLVKIRQRTDKILGKIIDEHRQNKKSSRNCTDEQKDLVDVLLLAQEEGQIEFPSGGDTCLKSIIMEIFTAGTE TSSMAVEWAMTELLRDQRVYEKAQSEVRKVFGGKGMVTEEGIEELKYLKLVVNEALRLHPPAPLLPRQTIEDIKIEGYDIPANTKVLVNVWAIARDPKYW VDPERFWPERFIEASSDFHGTDFMFMPFGVGRRICPGTTFGIANVELPLASLLYHFDWKTGDGSPLADLDASESSGATLIRKHELCLIPVCHHSSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10034397 [exp]	0	1
AT1G21550			Calcium-binding EF-hand family...		Lus10029730 [exp]	3.0	0.6846
AT5G62650			Tic22-like family protein (.1)		Lus10010502 [exp]	4.2	0.7004
AT4G10270			Wound-responsive family protei...		Lus10031616 [exp]	4.9	0.7544
AT4G10270			Wound-responsive family protei...		Lus10033729 [exp]	9.6	0.7205
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	11.6	0.7324
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10022887 [exp]	14.3	0.6762
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	15.4	0.7238
					Lus10008157 [exp]	20.2	0.6851
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019448 [exp]	22.9	0.7169
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10015875 [exp]	28.7	0.5980

Compare expression of checked genes

Lus10034397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.