Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019158 [exp] 461 / 6e-165 ND 40 / 0.002
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G087300 [exp] 271 / 5e-90 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01424 [flax] [poplar] R3H R3H domain
Representative CDS sequence Show only first row Show all	>Lus10034398 pacid=23176119 polypeptide=Lus10034398 locus=Lus10034398.g ID=Lus10034398.BGIv1.0 annot-version=v1.0 ATGAGCGTCACACAGTTCGCCATGGTCGAAGAATTGGCCTTTCTGATAAGGGACAACCTTCGGTCCAAACATCTCGTGCTCGCCATAGAAGACAACTTGG TCCATTTTCTCCAGAACGACACCAGCTCAGATGGCATCCTTGAGTTGGAGCCGATGGATCCATATAATCGTCTACTCTTGCATAGGCTAGCAGATATATT TGGATTTGCACATGTATCTATAGGCGAAGCAGAGGACCGGCACTTGATTTTGGAGAGGTGCCCAGAGACTTCCATACCAGCAATTCTTGTCAGTGACATC TTGATTCAGTATGATGAGCGTCTGTCTACCTCAGTTCCGCACCAGGTTTTGAGAAGAGATGATGCCACCCCAGTGTTGGGCGCAAAACCACCTTCACTTA GTACAATTAAGGAGAGAGAAGCTGCATATTTGGCTGCACGGGAACGTATATTCTCAGTCGATGTGGCAGAGATAAGAGAGCCTATTGAACATAGGCCACG AAATGTGCCTGCAGTAGCTCGTCGAATGATCGCTCACGCTTTAGGCCAGAAGGTTACTCCACCGGCTAAAGATGCTGGGGAGGAGCAGTCCAATGCTTGT GATGCAGAAAATAGGGATTGTCATCCGGAAAACGAGGATGAAGGCATATTGGGTCCCTTGGACGATTCCCAGGACCGTTTTTCCAAATTAACCAACAACA AACACGAGTCTAGCACAGCATCACCTGGTCAGGAAAACTCTGGTGGGTGTAGGTTAAAAAAGGAGTTCTCGAAGGAGGAACACTCACGAGCTGCGAGGAG GATGTTTGCCAATGCACTGGGTCTGCAACCAACAAAGGGTAATTCGGGTGCAAGGTGTAAGAAACAAGGGGATAGAGGATTCCGAGAATGA
AA sequence Show only first row Show all	>Lus10034398 pacid=23176119 polypeptide=Lus10034398 locus=Lus10034398.g ID=Lus10034398.BGIv1.0 annot-version=v1.0 MSVTQFAMVEELAFLIRDNLRSKHLVLAIEDNLVHFLQNDTSSDGILELEPMDPYNRLLLHRLADIFGFAHVSIGEAEDRHLILERCPETSIPAILVSDI LIQYDERLSTSVPHQVLRRDDATPVLGAKPPSLSTIKEREAAYLAARERIFSVDVAEIREPIEHRPRNVPAVARRMIAHALGQKVTPPAKDAGEEQSNAC DAENRDCHPENEDEGILGPLDDSQDRFSKLTNNKHESSTASPGQENSGGCRLKKEFSKEEHSRAARRMFANALGLQPTKGNSGARCKKQGDRGFRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034398 [exp]	0	1
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	1.0	0.9601
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	3.2	0.9562
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	3.5	0.9556
AT5G55850		NOI	RPM1-interacting protein 4 (RI...		Lus10006250 [exp]	3.6	0.9386
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	3.9	0.9533
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	4.9	0.9470
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	5.3	0.9462
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	6.0	0.9394
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	6.0	0.9438
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	6.0	0.9543

Compare expression of checked genes

Lus10034398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.