Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15860 562 / 0 ICME, ATPCME Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) AT3G02410 556 / 0 ICME-LIKE2 Isoprenylcysteine methylesterase-like 2, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G26120 553 / 0 ICME-LIKE1 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019156 [exp] 871 / 0 AT5G15860 558 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10035064 [exp] 707 / 0 AT1G26120 613 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017889 [exp] 704 / 0 AT1G26120 608 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10034083 [exp] 542 / 0 AT5G15860 569 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10003065 [exp] 528 / 0 AT5G15860 554 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10002907 [exp] 44 / 0.0002 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10002019 [exp] 42 / 0.0006 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132200 [exp] 615 / 0 AT1G26120 578 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G110700 [exp] 573 / 0 AT5G15860 541 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.004G104800 [exp] 558 / 0 AT5G15860 547 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.009G104300 [exp] 43 / 0.0004 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10034399 pacid=23175896 polypeptide=Lus10034399 locus=Lus10034399.g ID=Lus10034399.BGIv1.0 annot-version=v1.0 ATGCCGTCCTCCCAAATCCTCCCCATCACCACCGCCATCCACCACTACAACAACAAATTTCCCAAATCCCCGGAGACTTCATTGCTGATCAAAGAAGATG AAAACGCGGAGGAGAAGGATGTAGGTCATCATCATCACACGGTGATGAACCTCGTCGTCGACGACAACCCCTCCACGCGGCTCTTGATTTCTCCGTCGTT GTCGCTCTCCGACGAGGCCTCCAACAGGAAGCCTCTTCTGTCTCCAGAGGGCGGCGGAGGAGGAGGAACGGCGGCGAATGGGAGCCGGCAGGAGGATTCG TTGAGCCGTGAAGTGGGTCACGCCGCCGTGGAGACGTTTCTGATTACCAGATGGAGTTTGCAGCTCTTAACGTATCTTGGGGTAGGCTACAGATGGGTTG TCAGATTTCTTGCTCTTGGCTGTTACTCTTTGATGCTTTTCCCTGGATTTATTCAAGTTGGATATTACTATTTCTTCTCTAAGCATGTCATTAGGAGTGT AGTTTATGGCGATCAACCTAGAAATAGGCTTGATCTGTACATACCAAAAAACAGCGACGGTCCGAAGCCAGTTGTTGCTTTTGTAACTGGTGGAGCCTGG ATAATCGGGTATAAAGCTTGGGGTTCTCTTTTAGGATGGCAATTATCGGAAAGAGATATCATAGTCGCTTGCATAGATTACAGGAACTTCCCTCAGGGAA CTATGGGGGACATGGTACAGGATGCCTGTCAAGGAATCTCATTTGTATTTCAAAATATAGCTGAATATGGTGGTGATCCTAATAGGATTTATTTGATGGG GCAATCAGCTGGAGCACATATAGGTGGTTGTGCGCTTGTTGAGCAGGCAATTCGAGAAGCCGTCAAACAAGAGAATGTTTCTTGGAGCGTTTCCCAGATA AAGGCTTACTTTGGTTTATCAGGAGGGTATAACTTGTTTAACCTGGTTGATTACTTCCACAGTCGCGGTCTGTACCGATCCATATTTCTAAGTATAATGG AAGGTGAAGAGTCGTTAAAACGGTTTTCGCCTGAAGTACTTGCACAGGATCCAAGCTTGCAGAATGCAGTTTCTCTCCTGCCTCCAGTTGTTCTTTTCCA TGGTACAGCAGATTATTCAATCCCCTCAGCTGCCAGCACGAGTTTTGCTGAAACGCTCAAGGGAGCTGGAGTGAGGGCTGAGGCAATAACATATGAAGGC AAGACTCATACAGATCTGTTTCTTCAGGATCCAATGAGAGGTGGGAAAGATCAATTGTTTGAGGACTTAGTTTCGATAATACACAAGGGCGATTCGGATG CTGAAGCGAAAGACAAAGTGGCTCCTCCGAGACGACGCCTTGTTCCTGAGTTCATGCTGCAGTTGGCTCGCAAAGTCAGCCCCTTCTAG
AA sequence Show only first row Show all	>Lus10034399 pacid=23175896 polypeptide=Lus10034399 locus=Lus10034399.g ID=Lus10034399.BGIv1.0 annot-version=v1.0 MPSSQILPITTAIHHYNNKFPKSPETSLLIKEDENAEEKDVGHHHHTVMNLVVDDNPSTRLLISPSLSLSDEASNRKPLLSPEGGGGGGTAANGSRQEDS LSREVGHAAVETFLITRWSLQLLTYLGVGYRWVVRFLALGCYSLMLFPGFIQVGYYYFFSKHVIRSVVYGDQPRNRLDLYIPKNSDGPKPVVAFVTGGAW IIGYKAWGSLLGWQLSERDIIVACIDYRNFPQGTMGDMVQDACQGISFVFQNIAEYGGDPNRIYLMGQSAGAHIGGCALVEQAIREAVKQENVSWSVSQI KAYFGLSGGYNLFNLVDYFHSRGLYRSIFLSIMEGEESLKRFSPEVLAQDPSLQNAVSLLPPVVLFHGTADYSIPSAASTSFAETLKGAGVRAEAITYEG KTHTDLFLQDPMRGGKDQLFEDLVSIIHKGDSDAEAKDKVAPPRRRLVPEFMLQLARKVSPF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034399 [exp]	0	1
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	4.4	0.8489
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	4.5	0.8468
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	6.0	0.8236
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	7.5	0.8178
AT2G38185			RING/U-box superfamily protein...		Lus10004813 [exp]	8.1	0.8164
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	8.4	0.8115
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	9.5	0.7862
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10034049 [exp]	11.0	0.7738
AT1G74860			unknown protein		Lus10036649 [exp]	13.3	0.7747
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	14.7	0.7945

Compare expression of checked genes

Lus10034399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.