Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68740 1038 / 0 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 672 / 0 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT1G26730 418 / 3e-135 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 418 / 3e-135 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 414 / 5e-133 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 411 / 8e-133 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 404 / 2e-129 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 404 / 4e-129 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 391 / 2e-124 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 389 / 5e-124 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019155 [exp] 1457 / 0 AT1G68740 1065 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 732 / 0 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 706 / 0 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10030439 [exp] 426 / 1e-137 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 419 / 7e-135 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 389 / 8e-124 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 368 / 2e-115 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 348 / 3e-108 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 345 / 7e-107 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132300 [exp] 1177 / 0 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 1150 / 0 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 720 / 0 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G169400 [exp] 702 / 0 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G090400 [exp] 439 / 6e-143 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 433 / 1e-140 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 432 / 4e-140 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 432 / 7e-140 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 415 / 1e-133 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 375 / 2e-118 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10034400 pacid=23176116 polypeptide=Lus10034400 locus=Lus10034400.g ID=Lus10034400.BGIv1.0 annot-version=v1.0 ATGGTGAAATTTTCCAAGCAATTTGAGGGTCAGCTTGTTCCTGAGTGGAAAGAAGCTTTTGTGGATTACTGTAAACTCAAGAAAGACCTTAAGAAGTTCC CTAATCATCATAAAACAGCAACAACCACTTCCCCAATTAACAATGGCAGCTGCAGCAGTAGCTACTCTGTTGCTTTGGCTGCCACTCTTAAGAAGTTCTC TCATTTTGGCAATAGAGCCAACAACCATGGAGCCATTCAAGTTCATAAGAAGCTGGCATCTTCCCTTAGTAAAGGGGACATGTATGAGACAGAACTCCTT GATCAGTTTGAGGATTCTGAAGCAGCTAAGGACTTCTTTGCCTGCTTGGACTTGCAGCTTAACAAAGTTAACCAGTTCTTCAAGACTAAAGAGAAGGAGT TTGTTGAGAGAGGAGATTGCCTCAAGAAACAAATGGACATCCTCATTGAGCTCAAGACAGCACTCAAAGAGCAAAAGTGTAACAGCAACAAGGGTTCTAC TGTTGATCAGGACTCCATGGATGATCCTTCCTTTTCCTGCACCATTTCTTGTGAGGACTCTGTTGAGAAGGAGCCAGAAGAGGAGGAGGAGGAGAATGCT TCTGATGAATCGGGGAGAGCTACCGACGAATCGGGGGAGTTAGGGGGGAAGTCAATGAGGGTGAAGAGAGAGGACATGAAGATGAGAACATTATCAGGGA GAGTGTTCAGTTACCAAGGAAAGAGCTTGAGACTTAACATTCCATTGACAACTCCTCTACGTACCTTCTCTGCTATAAGCTATCTGGTTTGGGGAGATTC TGCTGTTAACAATCAGTCCTCCAAGAAATGCAACCCTGAGGGAAGCAACAACAGGCTACCTCTTCATATCAACAAGACAAAGTTGCATCACGCTGAGAAG ATGGTTAGTGGAGCTTTCATTGAGCTCTATAAAGGACTAGGATACCTCAAGACTTATAGGAACTTGAACCTGCTAGCTTTCATCAAGATTCTGAAAAAAT TTGACAAGGTTACTGGAAAGCAAGTACTTCCAATCTACTTGAGAGTTGTTGAAAGCTCATACTTCAACAGCTCTGATAAGGTGGTGAATCTAGCAGATGA AGTTGAGCAACTGTTCATCAAGCATTTTGCTGAAGATGACAGAAGAAAAGCCATGAAATATCTTAAGCCACAGCAGCGCAAAGAATCACACAGTGTCACA TTTCTCATTGGATTATTCACTGGATGCTCCATTGCCCTACTTGCTGGCATGTTCAGCCTCATATTCTTGCATTTCTTCATGTATGGCTGCAACATTTTCA TGTGGAGGAAAACCAGGATAAATTACAGCTTCATATTTGAGCTAGCCCCAACCAAGGATCTAAAGTACAGAGATGTATTCTTGATCTGTACCACCTCAAT GACTGTTGTTCTGGGGATTATGTTTGGTCATTTGTCGCTTATGTCGAAAGGGTACTCGTATTCCCATATTCAAGCCATCCCAGGCCTTCTATTACTGACC TTCCTATTGTTACTTGTTTGCCCTTTCAACATTTTCTATCAGTCTAGTCGTTATAGGTTCCTCTGTGTCATCAGGAACATCATTTTATCACCACTCTACA AGGTTGTGATGCTGGATTTCTTCATGGCAGATCAGCTATGTAGCCAGGCACCAATGCTTAGGAACCTGGAATATGTAGCCTGCTACTACATAACAGGAAG CTACAAAACACAAGACTACAACTACTGCACCAGGGCTGGCCATTATCGCGATCTTTCGTATGCAGTGTCCTTCCTACCTTACTACTGGCGAGCGATGCAG TGTGCCAGGAGATGGTTTGATGAAGGGGAAACAAGCCACCTAGTGAATCTAGGGAAATATGTGTCAGCAATGTTAGCAGCAGGAGCCAAAGTGGCTTATG AGAAAGACAGCAGTTTGGGGTGGCTTTGTGTAGTGGTTGCTATGTCAAGTGCAGCAACAATTTACCAGTTGTACTGGGACTTTGTAAAGGACTGGGGGTT GCTCCAGATGGATTCGAAGAATCCGTGGCTAAGGAACGAGTTAATGCTGCGTCAAAAGTTCATATACTACTTCTCCATGGGACTAAACCTTGTTCTGAGG CTAGCTTGGTTGCAAACAGTCCTACATTCAAGCTTTGAACACGTAGATTACCGCGTGACGGGACTGTTCTTGGCTGCTCTAGAGGTGATCAGGAGAGGTC ACTGGAATTTCTATAGGTTGGAGAATGAGCATCTAAATAATGCTGGAAAGTTTAGAGCAGTGAAGACAGTGCCACTTCCATTTCATGAAGTTGATGAAGA AGATTGA
AA sequence Show only first row Show all	>Lus10034400 pacid=23176116 polypeptide=Lus10034400 locus=Lus10034400.g ID=Lus10034400.BGIv1.0 annot-version=v1.0 MVKFSKQFEGQLVPEWKEAFVDYCKLKKDLKKFPNHHKTATTTSPINNGSCSSSYSVALAATLKKFSHFGNRANNHGAIQVHKKLASSLSKGDMYETELL DQFEDSEAAKDFFACLDLQLNKVNQFFKTKEKEFVERGDCLKKQMDILIELKTALKEQKCNSNKGSTVDQDSMDDPSFSCTISCEDSVEKEPEEEEEENA SDESGRATDESGELGGKSMRVKREDMKMRTLSGRVFSYQGKSLRLNIPLTTPLRTFSAISYLVWGDSAVNNQSSKKCNPEGSNNRLPLHINKTKLHHAEK MVSGAFIELYKGLGYLKTYRNLNLLAFIKILKKFDKVTGKQVLPIYLRVVESSYFNSSDKVVNLADEVEQLFIKHFAEDDRRKAMKYLKPQQRKESHSVT FLIGLFTGCSIALLAGMFSLIFLHFFMYGCNIFMWRKTRINYSFIFELAPTKDLKYRDVFLICTTSMTVVLGIMFGHLSLMSKGYSYSHIQAIPGLLLLT FLLLLVCPFNIFYQSSRYRFLCVIRNIILSPLYKVVMLDFFMADQLCSQAPMLRNLEYVACYYITGSYKTQDYNYCTRAGHYRDLSYAVSFLPYYWRAMQ CARRWFDEGETSHLVNLGKYVSAMLAAGAKVAYEKDSSLGWLCVVVAMSSAATIYQLYWDFVKDWGLLQMDSKNPWLRNELMLRQKFIYYFSMGLNLVLR LAWLQTVLHSSFEHVDYRVTGLFLAALEVIRRGHWNFYRLENEHLNNAGKFRAVKTVPLPFHEVDEED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10034400 [exp]	0	1
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001056 [exp]	4.4	0.8093
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10041967 [exp]	8.2	0.8063
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001424 [exp]	11.2	0.7839
					Lus10032559 [exp]	20.8	0.7546
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	21.0	0.7474
AT4G15450			Senescence/dehydration-associa...		Lus10011127 [exp]	21.8	0.7769
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	23.0	0.7837
AT5G15080			Protein kinase superfamily pro...		Lus10006643 [exp]	23.2	0.7611
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10016026 [exp]	26.1	0.7047
AT4G15450			Senescence/dehydration-associa...		Lus10043028 [exp]	27.0	0.7442

Compare expression of checked genes

Lus10034400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.