Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68730 129 / 1e-38 Zim17-type zinc finger protein (.1) AT5G27280 75 / 7e-17 Zim17-type zinc finger protein (.1) AT3G54826 52 / 2e-08 Zim17-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019154 [exp] 169 / 6e-55 AT1G68730 119 / 2e-35 Zim17-type zinc finger protein (.1) Lus10034555 [exp] 77 / 2e-17 AT5G27280 216 / 2e-71 Zim17-type zinc finger protein (.1) Lus10021838 [exp] 74 / 2e-16 AT5G27280 216 / 3e-71 Zim17-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132400 [exp] 173 / 1e-55 AT1G68730 139 / 1e-42 Zim17-type zinc finger protein (.1) Potri.002G015900 [exp] 75 / 8e-17 AT5G27280 219 / 2e-72 Zim17-type zinc finger protein (.1) Potri.005G246200 [exp] 75 / 8e-17 AT5G27280 225 / 5e-75 Zim17-type zinc finger protein (.1) Potri.008G037300 [exp] 54 / 5e-09 AT3G54826 173 / 2e-54 Zim17-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05180 [flax] [poplar] zf-DNL DNL zinc finger
Representative CDS sequence Show only first row Show all	>Lus10034401 pacid=23176040 polypeptide=Lus10034401 locus=Lus10034401.g ID=Lus10034401.BGIv1.0 annot-version=v1.0 ATGAAGGCTCGTCTTGCACATGGGAGTTCCTGTCCCGCCATAACCGCCACCTCGAACTCAAAGTTCAGACCTTGCCGGCCGGCCAATTCAGGCCCTGTTC GTGTTTTCTTCGAACCCTTTTCTTCCGCGAGCATAAAGGATTCTGCTTTCCGCTACCCAAGGTTGACAATCTCACAGAGTAAGGTAGTAGAACCACAACG CTGCCGCTCTAGGATACTGGTGGTTACTGCAGCGGTGGATGACGACTCCGGAACCCATTCGGAAGCTGAACTTAGCATTCCTTCCGACGGCAGTGCAACA ATAGACATAAACTTGCCAAGGAGGAGTTTACTTGTGCAGTTCACTTGCAACGATTGTGGTGAAAGAACACAAAGACTCGTAAATCGTTTGGCCTATGAGC GGGGGCTCGTCTTTGTACAGTGTGCAGGATGCGAGAAGTATCATAAACTAGTTGATAATCTTGGTCTCATAGTCGAATATGATTTGCGGGAGGAGATTCC AACCGAACCAAATGCAGATAAAGATCCATGA
AA sequence Show only first row Show all	>Lus10034401 pacid=23176040 polypeptide=Lus10034401 locus=Lus10034401.g ID=Lus10034401.BGIv1.0 annot-version=v1.0 MKARLAHGSSCPAITATSNSKFRPCRPANSGPVRVFFEPFSSASIKDSAFRYPRLTISQSKVVEPQRCRSRILVVTAAVDDDSGTHSEAELSIPSDGSAT IDINLPRRSLLVQFTCNDCGERTQRLVNRLAYERGLVFVQCAGCEKYHKLVDNLGLIVEYDLREEIPTEPNADKDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68730			Zim17-type zinc finger protein...		Lus10034401 [exp]	0	1
AT5G08320			unknown protein		Lus10010178 [exp]	15.7	0.6704
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10039455 [exp]	32.9	0.6614
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10010900 [exp]	49.6	0.5771
AT5G52030			TraB family protein (.1.2)		Lus10015005 [exp]	50.7	0.6073
					Lus10008493 [exp]	55.0	0.5892
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020314 [exp]	109.4	0.5499
AT1G07470			Transcription factor IIA, alph...		Lus10040769 [exp]	128.7	0.5418
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Lus10001413 [exp]	146.0	0.5221
AT1G55915			zinc ion binding (.1)		Lus10016607 [exp]	163.2	0.5253
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	169.4	0.4976

Compare expression of checked genes

Lus10034401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.