Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68720 414 / 2e-123 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) AT5G28050 82 / 2e-17 Cytidine/deoxycytidylate deaminase family protein (.1.2) AT1G48175 81 / 4e-17 TAD1, EMB2191 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) AT3G05300 62 / 3e-11 Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019153 [exp] 1520 / 0 AT1G68720 301 / 2e-84 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Lus10028482 [exp] 79 / 3e-16 AT1G48175 269 / 5e-93 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Lus10009163 [exp] 75 / 9e-15 AT1G48175 265 / 1e-91 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Lus10001791 [exp] 71 / 9e-14 AT5G28050 288 / 7e-101 Cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10015942 [exp] 69 / 5e-13 AT5G28050 288 / 3e-101 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132600 [exp] 656 / 0 AT1G68720 555 / 2e-174 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Potri.008G111100 [exp] 647 / 0 AT1G68720 522 / 3e-162 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Potri.005G049300 [exp] 77 / 9e-16 AT5G28050 281 / 4e-98 Cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.006G075300 [exp] 75 / 6e-15 AT1G48175 227 / 1e-76 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Potri.013G036000 [exp] 73 / 3e-14 AT5G28050 275 / 1e-95 Cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.010G003500 [exp] 72 / 8e-14 AT5G28050 267 / 2e-92 Cytidine/deoxycytidylate deaminase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10034402 pacid=23175900 polypeptide=Lus10034402 locus=Lus10034402.g ID=Lus10034402.BGIv1.0 annot-version=v1.0 ATGCACAACACTTACAGTAGTAGCTCAACTCTACTCTCAATTGGAACTCATGGGTCCATCTCCATTTCCTCCAATGATTGCTCCAACTTATTCTGTCAAA GATTTGAGAGAACCCCACCATTTCCCTTATCATCTCCTCGAACACAATCACAATGTTGTTGCTGTTGTGCTTGCTGTGCTTCATCATCATCATTATCCTC TCCATTTGCAATCCAACCCAGTTACTTGTTGTATGGGTTGCGGCAATCCAGTCTTATTCAATGGACGCCTTCTCGGAGGGTGAATTTGGGTACAAGGCCG CCCCAGTGTTATTATAACCGGATCCCGGATTGTGGGTTGGATCTAGGTGGCTATGAGGTTTCTTGCTCCTTTGAAAAGATCAGTGGGAGGAGAAGGCAGG AAAAGAACGGCTATAGGCAATTGAATTCGTGGCCAATTCGATGTTTGGATAGTGTGAATGATGATGCTGAGGCTGTGCTTGATTTGTTGAGTGAGGATGT GAGTGATGAGTATCTAGAGCATAGGAGGAAAATAGGCAAATTTTCGGCGAGATTGCACAAGGCAAGGAGGAAAGGGAGTTATTATGCTGGTGAATGTGAA AGCGAGAGGAGGGAGAATTTGAGATTGCGGTTGCTGTCTAGTAAGTCGAAGCGTGAGGTTGATGATTCAACTACCAATAAGTTAAAGAAACAAGGGTCAA GAATGAAGGAAGAGAGGATTGAGAAGAAGAAGGATATTAGGGCAGATAGTGCTAGTTTGTCATCTTATTACTCGATATCCTCCGAGGGGAGATTGGAGAG TGATGATAAGGAGGAGGAAGCTCATGATGAGGAACAGTCTAGTAGTTACATGAATCAGATGGGGGAGAGTAGTTCAGAAGGAGGTCAAGTGGTTAGAGAT TTGCAGAGGCGTGAAGATGTTTTCGAGAAGCAAAAGGAGGTTTCGGAACATAGGAGAATGAGTGGTATGGGATGGGATTTGAGAAATAAATCCGAGAAGA AACTTACTGACGTTGAGGAATCTGAATACTCAATGCACCTTTCACCTATGGAATCTGGACTTGCAAGCAGCCATGATGATGTTCCTCATGAATACAAGGT ATTTGATGGTGAGGAGGGATCATCTGTGGCAATTAGTCTGGAAAAAGGTGCGACTTCTCGAACAGCTAAGCAAGCAGTGAAACAATCTGAATTCAGCAGA AATAATCAGCAACCAACAGATAGGCAAGAGATTTATGAACATGCTAAAATTACAGAAATGGGGAAGGTTGGTATAGAAAGAATTTCCAATTATCAGAGGC AGTCTGAATCTAGAACGAAGATTCAGGAAGAAGCTACCAGCTCACGTTCGGAGACTAGTGGCAAACATGACCAAATGAGCGCAAGGAAAGTGACGGGGCA AACTGAATCCAGAGTGAGTTCAGAAGAAAGGCTAGAGGGTCAGCAAAAATATACAGTCAATACGTTTAGCATGCTTTCAGATACAAGAATGAAGAACCAG AGAGAAAGCAGTAGTTCTTTTCCTGCTTCGGAGTTGGGAGCAAAAAGGCAAAAGTTCCACTCAGATAAGAAAGCAGTTGAGAGAGTTCAATCAAGGAAGA TTCCCCAAAATGTGACGAACTTAACAGTTAATGTCACCAATGCATCTTTGGTCAATACTACCAACACAGAGACAGTGGCGAAGAGATTATCTGAGCAGAT AATTACTGATAGAGGAAGTAACACGTTAATTACAGGTCCCATTCAGGAAAGGGGAGGACTTCCTGCTGCAACTGATGAAAACAACTCTCGACTGAAGGTA GTACGGGAGGAACACAGGGATTCTAGCCTTCATAATAGAAGTTCACAAGGGGCTTCTAGTTCTGAGGTAGCGATGCATCACGTTGACCTGGAGGGGGATG TGGTCCAGAGAAGACCGGAGGCTGTAATGGTGCCACCATCTCGTCAATTAGTAGGCAGAGGTTCGTTTCGTGTTGATTCAACTGATAAGATTAAAGTTCA AGATGTTTCTGGTGGCTCATATGCAAATTCAGGAGAGAATGTCCCTGAAATTCTTCAAGAATCAGAGTATGAAGAATTACAAGGTGAGCAGTATGATGAC TCATTGCATCTCCCTACCCGTGGAGATGCTCTGGGTTCAGCTCGTCTTCTTGAAGCATCATCCATGCAGCATGTTGGGGAGTTTGTTGAGAGGGCAAGGC TTGAAGCGAATTACGAAACTGATCGTAGTAGGCCAACCAGTTCAGGTCTGTATGGTCCTGAAGACTCGAAGGGGGATAATTCAAGACATTCATCCAAGGA TTCTGGCGAAAAGGGTCCCTCTGCCGAAATGTGGGATGTGACGGACCCATATGTTCTTGAACATCCAAAGGTAGACGCACCAGAGGAAAAACTTGAAAGA ACCGACCAAGCAGGAACTATTGCTGCTGAAGGTTCTGCAATTAGGAAATCTGGAAGATCCTTGTGGGGTATCATTGGGGATATAGTAAAACTACGCTGGG GTCCTCGTACCGAGACCTCTAAATCAACTACGAATTCAGGTGGAAAGAGTTCATCAAATGATTCAGCAGGTAGTGAGGCTTGGTTTTCAGGCCATGATCC TGATGAAACCAGTGAAAGACACATGAAAAGGGGAACAAGCATGCCAAAGAGACACAGTTCTGATAACGTAGTGTTAAGGCCTGCTTCTGGTCATGAGCAT GGAGAAGTATCCGGTACAGGTGATGAATCGTTACCTACGATAGGAAGAGATGACGTAGCTATGGTATCTCCTTCGGTAATATTAAGTGGGTCAACAACAT CTATGGCATTTGCTTCGCCTGAGGAAGACCTTGACTGGAGTCCAGATGAAAAGAGGTCTGAAGTCACTGGGAAAGCATCAAAAGTATCAATGCCTGTAAG TACAAGGAGTAGTCCCATCAAAGAGCAGAGTTCAAGTGATCGTAGAAGTGACACATCAGGAACTGGTTTAATGGAGCAACAACCTTTGAGTTCAAAGCTA GAAGTGTCGGGTTCTGGTGAGAAAGAAGGGGAGCTGAAAAGAAGGAAGCTTCAGCGGAACAAACAGGTGATAAGAGACAGATTTGATGACTGGGAAGAGG CCTATATTCTCGAAAGTGAGCAGCTTAAAAACGACGAAATGTTCATGAGAGAAGCATTGTTAGAAGCGAAGAAGGCTGCAGATACTTGGGAGGTACCTGT TGGTGCTGTGCTTGTACAACACGGGAATATCATAGCTCGTGGCTACAACTTAGTGGAAGAGTTACGCGACTCGACTGCCCATGCCGAGATGATTTGCATC CGTGAGGCTTCGAACCAACTTCGTTCATGGAGGCTTGCGGATACGACGCTTTATGTAACCCTGGAACCATGCCCTATGTGTGCTGGAGCAATCCTTCAAG CAAGGATAGACACCGTCGTATGGGGAGCTCCCAATAAGCTTCTTGGAGCTGATGGAAGTTGGATACGGCTTTTCCCCAATGGGGAAGTAGGGAACGGGCT GGAAACAGATAAGCCAGCTCCACCGGTCCATCCATTCCATCCGAAAATGACAATTCGACGAGGTGTACTTGCTACCGAGTGTGCAGACGTGATGAAACAG TTCTTCCAGCTAAGGAGAACTAAAAAGGCGAAGAAGGAAGTGCAGCAGCCTCCCCAGAACTCATTAGTGCAGGTAGTCAATCATCCCTCGAAGATACTAA AGAAGATGCACCATATTTTCCACGTCATGTTTTGCTTGTGA
AA sequence Show only first row Show all	>Lus10034402 pacid=23175900 polypeptide=Lus10034402 locus=Lus10034402.g ID=Lus10034402.BGIv1.0 annot-version=v1.0 MHNTYSSSSTLLSIGTHGSISISSNDCSNLFCQRFERTPPFPLSSPRTQSQCCCCCACCASSSSLSSPFAIQPSYLLYGLRQSSLIQWTPSRRVNLGTRP PQCYYNRIPDCGLDLGGYEVSCSFEKISGRRRQEKNGYRQLNSWPIRCLDSVNDDAEAVLDLLSEDVSDEYLEHRRKIGKFSARLHKARRKGSYYAGECE SERRENLRLRLLSSKSKREVDDSTTNKLKKQGSRMKEERIEKKKDIRADSASLSSYYSISSEGRLESDDKEEEAHDEEQSSSYMNQMGESSSEGGQVVRD LQRREDVFEKQKEVSEHRRMSGMGWDLRNKSEKKLTDVEESEYSMHLSPMESGLASSHDDVPHEYKVFDGEEGSSVAISLEKGATSRTAKQAVKQSEFSR NNQQPTDRQEIYEHAKITEMGKVGIERISNYQRQSESRTKIQEEATSSRSETSGKHDQMSARKVTGQTESRVSSEERLEGQQKYTVNTFSMLSDTRMKNQ RESSSSFPASELGAKRQKFHSDKKAVERVQSRKIPQNVTNLTVNVTNASLVNTTNTETVAKRLSEQIITDRGSNTLITGPIQERGGLPAATDENNSRLKV VREEHRDSSLHNRSSQGASSSEVAMHHVDLEGDVVQRRPEAVMVPPSRQLVGRGSFRVDSTDKIKVQDVSGGSYANSGENVPEILQESEYEELQGEQYDD SLHLPTRGDALGSARLLEASSMQHVGEFVERARLEANYETDRSRPTSSGLYGPEDSKGDNSRHSSKDSGEKGPSAEMWDVTDPYVLEHPKVDAPEEKLER TDQAGTIAAEGSAIRKSGRSLWGIIGDIVKLRWGPRTETSKSTTNSGGKSSSNDSAGSEAWFSGHDPDETSERHMKRGTSMPKRHSSDNVVLRPASGHEH GEVSGTGDESLPTIGRDDVAMVSPSVILSGSTTSMAFASPEEDLDWSPDEKRSEVTGKASKVSMPVSTRSSPIKEQSSSDRRSDTSGTGLMEQQPLSSKL EVSGSGEKEGELKRRKLQRNKQVIRDRFDDWEEAYILESEQLKNDEMFMREALLEAKKAADTWEVPVGAVLVQHGNIIARGYNLVEELRDSTAHAEMICI REASNQLRSWRLADTTLYVTLEPCPMCAGAILQARIDTVVWGAPNKLLGADGSWIRLFPNGEVGNGLETDKPAPPVHPFHPKMTIRRGVLATECADVMKQ FFQLRRTKKAKKEVQQPPQNSLVQVVNHPSKILKKMHHIFHVMFCL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Lus10034402 [exp]	0	1
AT2G14860			Peroxisomal membrane 22 kDa (M...		Lus10011424 [exp]	8.5	0.6997
AT3G55580			Regulator of chromosome conden...		Lus10004700 [exp]	9.2	0.7286
AT3G22970			Protein of unknown function (D...		Lus10006634 [exp]	9.4	0.7209
AT3G55580			Regulator of chromosome conden...		Lus10040266 [exp]	10.4	0.7243
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	10.4	0.7544
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006376 [exp]	17.3	0.7222
AT3G01060			unknown protein		Lus10030700 [exp]	18.7	0.7367
AT3G01060			unknown protein		Lus10005219 [exp]	18.7	0.7537
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	19.4	0.7336
AT5G06980			unknown protein		Lus10026150 [exp]	25.3	0.6910

Compare expression of checked genes

Lus10034402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.