Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68710 768 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 764 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 739 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G13210 732 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT3G27870 700 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 595 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 584 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 584 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 573 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 445 / 3e-144 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019152 [exp] 1048 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 832 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 682 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 672 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 670 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 583 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 582 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 579 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 521 / 2e-173 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G111200 [exp] 782 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 778 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 778 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 677 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 552 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 542 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 524 / 6e-174 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 445 / 4e-144 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 444 / 6e-144 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.016G138000 [exp] 270 / 3e-79 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10034403 pacid=23176136 polypeptide=Lus10034403 locus=Lus10034403.g ID=Lus10034403.BGIv1.0 annot-version=v1.0 ATGGGAGGAGGTAAAAAGAGAATAAGGCTGAGCAGGTTGTACTCCTTCAGATGCGGGAAAGCATCATTTGTGGATGACCATTCCCAGATTGGTGGGCCTG GATTCTCAAGGGTAGTATTTGCAAATGAGCCGGATTGCTTTGAAGCTGGGATCCGGAACTATGGTGACAACTATGTCAGCACCACTAAGTACAACGTCGC AACTTTCTTCCCCAAGTCCTTGTTTGAGCAGTTCAGGAGGGTTGCAAATTTCTACTTCTTGGTCACTGGGATCTTGTCCTTCACCGCTTTGGCGCCTTAC AGCGCTGTTAGTGCCATTATACCTCTCATCGTTGTTATTGCAGCTAGTATGGGTAAAGAAGGTATTGAAGATTGGCGACGCAAACAGCAGGATACTGAGG TGAACAATAGGAAGGTTAAAGTTCATGAAGGAGACGGGGTATTCAGTGAAACTGAATGGAAGAATTTGCGAGTTGGAGATATAGTTAAGGTGGAGAAAGA TGGATTTTTCCCTGCAGATTTACTCCTACTGTCGTCAAGTTATGAGGATGGAATCTGCTATGTTGAAACGATGAACCTTGATGGAGAGACGAATTTGAAG CTCAAACAAGGGCTTGAGACGACTACGGTCTTGCACGAAGAATCTGACTTCACCAACTTCAAATCTCTTATCAAATGCGAAGACCCTAACGCAAACTTGT ACACCTTTGTTGGAACTTTGGAGCATGAGGAGAACCAATTTCCCCTCACGCCTCAGCAGCTTCTCCTCAGAGACTCGAAGCTTAGAAACACAGACTTCAT TTACGGGGTGGTTGTGTTCACGGGGCTTGATACAAAGGTGATGCAAAATGCTACAGCTCCTCCGTCAAAGAGAAGCAAGATCGAAAAGAAGATGGACCAA ATCATCTACTTCTTGTTTGGTGTAGTGTTCTTGATGGCATTCATTGGCTCTATTTTCTTCGGTATCTCGACAAAAGAGGACTTGAAAGATGGAAGGATGA AGAGATGGTATCTTAAACCAGATGATTCTGAAATCTTCTTTGATCCTAAAAATGCATTTGCCGCTGCAGCCCTTCACTTCCTTACTGCGATAATGTTGTA TGGTTACTTCATCCCCATCTCACTCTATGTGTCTATAGAAATCGTGAAAGTTCTTCAGAGCATCTTCATCAATCGGGATATCCATATGTATTACGAGGAG ACTGATAAACCAGCACACGCAAGGACCTCAAATTTGAATGAGGAACTTGGGCAGGTTGATACAATACTTTCGGATAAAACCGGGACTCTGACCTGCAATT CTATGGAGTTCATCAAGTTCTCATCAGCCGGGACTGCTTATGGCCATGGGGTAACAGAAGTTGAGAGGGCTATGGAAAGAAAGACAGGCACTCCCGTAAG GCTCTCTGGTTTGGAGGGATATATTGAGTCTAAGAATAACATCCCGATCAAAGGCTTTAACTTTGAAGATGGACGAATTATGAAAGGAGAATGGAGAAAT CAGCCCAATGCTGATGTCATACAGAAATTTTTGCGATTATTGGCCGTCTGTCACACAGCCATAACTGCAGTTTATTAA
AA sequence Show only first row Show all	>Lus10034403 pacid=23176136 polypeptide=Lus10034403 locus=Lus10034403.g ID=Lus10034403.BGIv1.0 annot-version=v1.0 MGGGKKRIRLSRLYSFRCGKASFVDDHSQIGGPGFSRVVFANEPDCFEAGIRNYGDNYVSTTKYNVATFFPKSLFEQFRRVANFYFLVTGILSFTALAPY SAVSAIIPLIVVIAASMGKEGIEDWRRKQQDTEVNNRKVKVHEGDGVFSETEWKNLRVGDIVKVEKDGFFPADLLLLSSSYEDGICYVETMNLDGETNLK LKQGLETTTVLHEESDFTNFKSLIKCEDPNANLYTFVGTLEHEENQFPLTPQQLLLRDSKLRNTDFIYGVVVFTGLDTKVMQNATAPPSKRSKIEKKMDQ IIYFLFGVVFLMAFIGSIFFGISTKEDLKDGRMKRWYLKPDDSEIFFDPKNAFAAAALHFLTAIMLYGYFIPISLYVSIEIVKVLQSIFINRDIHMYYEE TDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKFSSAGTAYGHGVTEVERAMERKTGTPVRLSGLEGYIESKNNIPIKGFNFEDGRIMKGEWRN QPNADVIQKFLRLLAVCHTAITAVY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68710			ATPase E1-E2 type family prote...		Lus10034403 [exp]	0	1
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	5.2	0.7663
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	5.4	0.8172
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	5.7	0.8098
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	7.1	0.8059
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10030809 [exp]	8.9	0.7597
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10021747 [exp]	9.5	0.7403
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	14.7	0.7807
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10009268 [exp]	14.7	0.6099
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	16.1	0.7965
AT1G17500			ATPase E1-E2 type family prote...		Lus10006017 [exp]	16.1	0.6823

Compare expression of checked genes

Lus10034403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.