Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25610 956 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 944 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G68710 941 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 875 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G27870 772 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 723 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 718 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 705 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 699 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 503 / 5e-165 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019152 [exp] 1209 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1061 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1023 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 791 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 719 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 716 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 716 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 707 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 573 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G058000 [exp] 938 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 876 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 857 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 750 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 720 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 715 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 645 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 503 / 3e-165 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 498 / 4e-163 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.010G246200 [exp] 376 / 4e-117 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034404 pacid=23176009 polypeptide=Lus10034404 locus=Lus10034404.g ID=Lus10034404.BGIv1.0 annot-version=v1.0 ATGTCTGTGATAGTAAGGGACGAGGATGGAAAGCTAATGTTACTCTCTAAAGGAGCCGACAATGTCATGTTCGAAAGGCTGGCCAAGGGTGGTAGGCAGT TTGAAAAGGAGACAAGGGAACATGTAAATCAATATGCTGATGCAGGCCTTAGGACTCTGATACTTGCCTACCGTGAACTCAATGAACTTGAATACGATAA CTTCAATTCGAAGTTCAATGCTGCGAAAACTTCTGTAAGTGCAGATCGGGAAACTTTGATTGAAAAAGTGGCAGCGGATGTGGAGAAGGACCTAATACTC CTTGGTGCAACTGCTGTTGAGGACAAACTCCAAGAAGGGGTTCCTGACTGCATAGACAAGCTAGCCCAAGCAGGAATCAAGATATGGGTTTTGACAGGAG ACAAAATGGAAACTGCCATTAACATTGGGTTTGCATGTAGTTTGCTTAGACAAGGAATGACACAGATAATAATCAATGTCGAGCTCCCGGAACTGCAAGC ATTAGAAATTGCTGGAGATAAGGCAACCATTAATAAGATATCAAAAGAGCATGTTTTACGTCAGATAACTGAAGGGAAAAAGCTAGTGGCTGGATCAGGT GCTGGCCTTGATGCATTTGCATTGATAATTGATGGGAAGTCACTCACCTACGCTCTGGAAGACGATGTCAAGAACTTGTTCCTGGAACTTGCTGTGAGTT GTGCATCAGTCATTTGTTGCCGATCATCACCCAAACAGAAGGCATTGGTTACAAGACTGGTGAAAAATGGAACTGGTAAGACAACATTAGCTGTTGGTGA TGGTGCCAATGACGTCGGTATGCTTCAGGAAGCTGATATTGGAGTTGGAATTAGTGGTGTTGAAGGAATGCAGGCTGTCATGTCGAGTGATGTTTCAATT GCTCAATTTCGGTACTTGGAGCGTTTGCTACTCGTGCATGGACATTGGTGTTACAGGAGGATATCATCAATGATATGTTACTTCTTCTACAAGAATGTCA TTTTCGGAATCTCTCTATTCTTGTACGAAGCATATGCATCGTTTTCGGGACAAACTTTATACAACGACTGGTTTCTCTCACTTTACAACGTCTTCTTCAC ATCACTTCCAGTCATCGCTTTGGGCGTTTTCGACCAGGATGTTCCTTCCCGCCTTGCAATTAAGTTTCCTCTGCTATACCAAGAAGGGGTGCAGAACGTA CTCTTCAGCTGGCGTAGGATAATCACTTGGATGGTCAATGGCGTGTACAGCGCGATAATGATCTACTTTTTCTGTATAAAAGCGATGAGGAGCCAAGCCT TCAACGACGACGGGAAGACAGCAGGACGAGAGGTCCTAGGAGCAACGATGTACACATGCATCGTGTGGACCGTAAACTTGCAGATGGCCCTCTCCATCAA CTACTTCACCGTGCTACAACACATATTGATATGGGGCTCCATCGCATTCTGGTACATTTTCCTCATGATCTACGGGGCCATGTCCCCGGACTTCGCCCAA AACGCCTACAAGCTCTTCCTGGAAGCACTAGCACCGGCTCCTTCATACTGGCTGATCACAATGTTCGCTGTGGTGTCAGCACTGATACCGTACTTCTCCT ACTCGGTAATTCAAATGAGGTTCTTCCCGATGTACCATCAAATGATTCAATGGATAAGGCATGAGGGGCAGTCGGAGGACCCCGAGTTCTGCCACATGGT TCGACAGAGGTCGATAAGGCCAACGACAGTCGGGTTCACAGCACGGGTAGCAGCTCGATCGAGGTCGAGCAGCAGAAGAGAAGAGAACCCGTTTCAAGCA TAG
AA sequence Show only first row Show all	>Lus10034404 pacid=23176009 polypeptide=Lus10034404 locus=Lus10034404.g ID=Lus10034404.BGIv1.0 annot-version=v1.0 MSVIVRDEDGKLMLLSKGADNVMFERLAKGGRQFEKETREHVNQYADAGLRTLILAYRELNELEYDNFNSKFNAAKTSVSADRETLIEKVAADVEKDLIL LGATAVEDKLQEGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMTQIIINVELPELQALEIAGDKATINKISKEHVLRQITEGKKLVAGSG AGLDAFALIIDGKSLTYALEDDVKNLFLELAVSCASVICCRSSPKQKALVTRLVKNGTGKTTLAVGDGANDVGMLQEADIGVGISGVEGMQAVMSSDVSI AQFRYLERLLLVHGHWCYRRISSMICYFFYKNVIFGISLFLYEAYASFSGQTLYNDWFLSLYNVFFTSLPVIALGVFDQDVPSRLAIKFPLLYQEGVQNV LFSWRRIITWMVNGVYSAIMIYFFCIKAMRSQAFNDDGKTAGREVLGATMYTCIVWTVNLQMALSINYFTVLQHILIWGSIAFWYIFLMIYGAMSPDFAQ NAYKLFLEALAPAPSYWLITMFAVVSALIPYFSYSVIQMRFFPMYHQMIQWIRHEGQSEDPEFCHMVRQRSIRPTTVGFTARVAARSRSSSRREENPFQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	0	1
AT4G33050		EDA39	embryo sac development arrest ...		Lus10014872 [exp]	1.4	0.9707
AT3G47570			Leucine-rich repeat protein ki...		Lus10019525 [exp]	2.0	0.9664
AT5G52430			hydroxyproline-rich glycoprote...		Lus10024642 [exp]	2.4	0.9700
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	3.5	0.9680
AT5G57010			calmodulin-binding family prot...		Lus10013526 [exp]	3.5	0.9654
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033366 [exp]	4.0	0.9614
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10025732 [exp]	4.5	0.9582
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10035929 [exp]	5.8	0.9555
AT2G31945			unknown protein		Lus10013740 [exp]	7.4	0.9581
AT1G16670			Protein kinase superfamily pro...		Lus10023510 [exp]	12.0	0.9492

Compare expression of checked genes

Lus10034404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.