Plant FIBer expression Database

Lus10034406 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035070
[exp]
81 / 1e-18 AT1G26140 74 / 3e-16 unknown protein
Lus10017899
[exp]
81 / 2e-18 AT1G26140 78 / 1e-17 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G111500
[exp]
43 / 4e-05 AT3G25597 49 / 3e-07 unknown protein
PFAM info
Representative CDS sequence
>Lus10034406 pacid=23176114 polypeptide=Lus10034406 locus=Lus10034406.g ID=Lus10034406.BGIv1.0 annot-version=v1.0
ATGGATGACTGCAACCTCATGGCTGCAGACTGTATGGTGCTGTCCTGCTGTTCCTGCCAGTGCCTACTCCTACAATTTCTCATCTTTCTCTTCCTCAAGC
TTCCGCGGAGGATAAAAGACTACGCAATGAGGACGATTAAGATGGTTGATGCAGCAGAGCTAGCAAGGAATGGATCAGAAAAGTATGCTCAGATGTACAA
CCGTGAAGAATCAATGTGCATTGACATTAATGGAGGGATAGATGATCAGGAGTACTCCAATGATTTAGAGGATCCTGGTGGCAAGAAGGATTGCATTGAA
GAAATAGAGAGGGTACTGCTGGAGGAATATTATGCCAAGGGTGAGTTTGGATTTGGAAGCTTTTGGAGGAAAGAAGTGATGTTCCAAATGACGTCTACCT
CACGTCCATCTCATAGTTCTTCATCTTCATCATTACAAAGTTGTACTGCAAATATGAAGAAGGGAATGGGGTTGGAAACTGTACAGTTTGGATTAATTGA
GATTGTTCATTCTTTGTCTTTTTCATCATATGGACCGTGCAAGGACATTAATCAGAGTTATCCTAGTATTTGGAGAGACTTGAGACGTGACGAGCTTTGT
GGATTTTAA
AA sequence
>Lus10034406 pacid=23176114 polypeptide=Lus10034406 locus=Lus10034406.g ID=Lus10034406.BGIv1.0 annot-version=v1.0
MDDCNLMAADCMVLSCCSCQCLLLQFLIFLFLKLPRRIKDYAMRTIKMVDAAELARNGSEKYAQMYNREESMCIDINGGIDDQEYSNDLEDPGGKKDCIE
EIERVLLEEYYAKGEFGFGSFWRKEVMFQMTSTSRPSHSSSSSSLQSCTANMKKGMGLETVQFGLIEIVHSLSFSSYGPCKDINQSYPSIWRDLRRDELC
GF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G26140 unknown protein Lus10034406
[exp]
0 1
AT1G61110 NAC ANAC025 NAC domain containing protein ... Lus10003334
[exp]
2.0 0.8406
AT5G44640 BGLU13 beta glucosidase 13 (.1) Lus10024065
[exp]
4.2 0.8198
AT1G02030 C2H2ZnF C2H2-like zinc finger protein ... Lus10038929
[exp]
5.3 0.6874
AT3G13560 O-Glycosyl hydrolases family 1... Lus10000842
[exp]
9.8 0.7278
Lus10026794
[exp]
11.2 0.7554
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Lus10036314
[exp]
12.4 0.7532
AT5G03980 SGNH hydrolase-type esterase s... Lus10009325
[exp]
21.3 0.7667
AT5G46090 Protein of unknown function (D... Lus10013933
[exp]
22.0 0.7794
AT4G18160 KCO6, ATTPK3, A... Ca2+ activated outward rectify... Lus10004538
[exp]
22.5 0.6952
AT3G11910 AtUBP13, UBP13 ubiquitin-specific protease 13... Lus10013550
[exp]
29.3 0.7558

Lus10034406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.