Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04240 61 / 3e-12 XERICO RING/U-box superfamily protein (.1.2) AT1G15100 56 / 1e-10 RHA2A RING-H2 finger A2A (.1) AT2G01150 52 / 2e-09 RHA2B RING-H2 finger protein 2B (.1) AT4G00305 52 / 2e-09 RING/U-box superfamily protein (.1) AT5G17600 52 / 2e-08 RING/U-box superfamily protein (.1) AT1G80400 52 / 2e-08 RING/U-box superfamily protein (.1) AT3G61460 50 / 2e-08 BRH1 brassinosteroid-responsive RING-H2 (.1) AT3G62690 51 / 3e-08 ATL5 AtL5 (.1) AT3G51325 49 / 3e-08 RING/U-box superfamily protein (.1) AT5G45290 51 / 4e-08 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019150 [exp] 198 / 2e-66 AT2G04240 62 / 6e-13 RING/U-box superfamily protein (.1.2) Lus10007936 [exp] 64 / 2e-13 AT2G01150 104 / 3e-29 RING-H2 finger protein 2B (.1) Lus10013475 [exp] 63 / 3e-13 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1) Lus10008283 [exp] 57 / 8e-11 AT3G61460 77 / 5e-18 brassinosteroid-responsive RING-H2 (.1) Lus10007937 [exp] 57 / 1e-10 AT1G15100 100 / 2e-27 RING-H2 finger A2A (.1) Lus10003617 [exp] 53 / 2e-09 AT2G01150 63 / 6e-13 RING-H2 finger protein 2B (.1) Lus10019685 [exp] 53 / 3e-09 AT5G43200 62 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10008235 [exp] 52 / 1e-08 AT5G20885 61 / 5e-12 RING/U-box superfamily protein (.1) Lus10016428 [exp] 51 / 1e-08 AT5G45290 59 / 2e-11 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G133300 [exp] 67 / 5e-15 AT3G61460 69 / 2e-15 brassinosteroid-responsive RING-H2 (.1) Potri.010G133200 [exp] 66 / 2e-14 AT3G61460 69 / 3e-15 brassinosteroid-responsive RING-H2 (.1) Potri.010G047100 [exp] 61 / 1e-12 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1) Potri.010G133700 [exp] 61 / 2e-12 AT3G61460 66 / 4e-14 brassinosteroid-responsive RING-H2 (.1) Potri.008G185800 [exp] 60 / 4e-12 AT1G67856 127 / 2e-38 RING/U-box superfamily protein (.1) Potri.005G081300 [exp] 58 / 3e-11 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.007G086200 [exp] 56 / 1e-10 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.007G086300 [exp] 56 / 2e-10 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.014G170400 [exp] 54 / 7e-10 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.007G086100 [exp] 54 / 1e-09 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10034407 pacid=23175840 polypeptide=Lus10034407 locus=Lus10034407.g ID=Lus10034407.BGIv1.0 annot-version=v1.0 ATGTCGAAATTCTTCAATCTCATCTCCAACCAACTCCAATGGGTTCTGGAATTCTTGAATTCCATTCGCAGACAGCTCGGAAGAAATTGTGAAATGGGAA AACAGAGTTCAGCTGGCCTCTGCCACTACTGCTACTACAGCGGCAGCAACACCTCAGAATTCGAAGACTGCTCAATCTGTCAGGCCAGGATTCAGCAAAG CGAACAAGTTACCGAATTGAGATGCAACCATTTGTTCCACAGAGCTTGCTTGGACCGATGGTTCAGATCATCCGACTTGACTTGCCCGCTTTGCAGGGAC AACTTAGCTCTCACCGCCGCCGACGACCGAGGAGTTCATGTTTTCCAGCTGCAGTTCGTGAGTACTACTAGTTTTCGATCCTCGGACGACCGGGATTCCT TTTGGTTACGATGA
AA sequence Show only first row Show all	>Lus10034407 pacid=23175840 polypeptide=Lus10034407 locus=Lus10034407.g ID=Lus10034407.BGIv1.0 annot-version=v1.0 MSKFFNLISNQLQWVLEFLNSIRRQLGRNCEMGKQSSAGLCHYCYYSGSNTSEFEDCSICQARIQQSEQVTELRCNHLFHRACLDRWFRSSDLTCPLCRD NLALTAADDRGVHVFQLQFVSTTSFRSSDDRDSFWLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04240		XERICO	RING/U-box superfamily protein...		Lus10034407 [exp]	0	1
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016460 [exp]	7.1	0.9137
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	7.5	0.9254
AT5G55530			Calcium-dependent lipid-bindin...		Lus10003765 [exp]	11.2	0.9020
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	11.5	0.9191
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10039200 [exp]	13.0	0.8963
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	14.1	0.9151
AT1G01490			Heavy metal transport/detoxifi...		Lus10017520 [exp]	14.4	0.9142
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	18.8	0.9085
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	19.1	0.9130
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	21.9	0.9021

Compare expression of checked genes

Lus10034407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.