Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42450 538 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 338 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 317 / 3e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 310 / 2e-98 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 307 / 4e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 306 / 1e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 305 / 2e-95 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G22410 302 / 6e-95 SLO1 SLOW GROWTH 1 (.1) AT3G49142 300 / 3e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 298 / 8e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019149 [exp] 728 / 0 AT1G13560 477 / 7e-165 aminoalcoholphosphotransferase 1 (.1.2) Lus10015898 [exp] 348 / 1e-111 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 337 / 1e-108 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 325 / 3e-102 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 321 / 1e-100 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 316 / 3e-100 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 314 / 1e-99 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 305 / 3e-95 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012796 [exp] 297 / 7e-95 AT2G36980 516 / 1e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213200 [exp] 615 / 0 AT5G42450 545 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 340 / 2e-109 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 326 / 4e-104 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.002G258766 [exp] 310 / 3e-99 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.012G048800 [exp] 315 / 6e-99 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 301 / 2e-96 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 307 / 8e-96 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 306 / 8e-96 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G051300 [exp] 303 / 2e-95 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 297 / 9e-95 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034408 pacid=23175907 polypeptide=Lus10034408 locus=Lus10034408.g ID=Lus10034408.BGIv1.0 annot-version=v1.0 ATGGCTTCCAAGTTATTCAGATTGGGCCATTGTCTATACTTCTCTACAAAAACGCCAGCTTTAGCTTTTGATCTTCACTCGTGCACCGCAGGGTGGACTG CACACCAACTGTTCGATAAATTGCCCCAACTAGATGCCATATCCGCAAATAATTTGATTGGGCAGCTTTCTAGACAAAAGCAACACAAGGATGCTATACG AGTGTTCCGTGGAATGCTGTACTGGAACATTACACCTACTCAGTTCACTTTCGGGACTGTGATTCCCTTGTCAATTGCCATCAAGGACATTGACTTGGGC AGGCAATTCCATTGCTGTGCTGTGAGATTAGGATTCAACTCTGTAGTCTTTGTCGGGACTGCATTGCTAGACTTTTATGCCAAGTTAGTTTCCTTACATG AAGCTCAAATGGCTTTTCAGGATATAAATTATCCCAATGTTGTTTCTTACACAACTCTGGTACATGGCTACCTGAAGAAAGGTTCATACAAGGATGCTAT CCGCCTCTTTAATCAAATGCCAGAGAGGAATGTGGTGTCCTGGAACATGATGATCGGTGGACTCAGCCAAGTTGGTCATAACGAAGAGGCTGTAAATCTC TTTGTCCAGATGCTGAGAGAAGGTTTCATCCCTGATGAACTGACCTTTCCTTGTGCTATAATCGCTGCTTCGAATGTAGCAGCAATAGGAATTGGGAAGA GCTTCCATGCTTGTGCTGTTAAAACAAATTGTGTTCTTGATGTGTTCGTTGCAAACTCTTTAATTAGCTTCTATGCAAAATGTGGGAATATGGAGGATAG TCTACTTGTCTTTGACGATATTACTGAACGAACCGTTGTCTCTTGGAATGCTGTGATTTGTGGGTTTGCTCAGAATGGGAGAGGAAATGATGCTGTCAAA TTTTTCAACAGGATTGTGGCATCAGGTCTTCAGCCTAATGATGTCACGGTTTTGGGGGTGTTATGGGCTTGCAACCATGCTGGTCTCGTTGATGATGGAT ATTCACATTTCATCGGAGCAAGAATCAATAACCCAAGTGCTTTGAAGCCTGAGCATTATGCATGTATGGTCGATCTACTTTCTCGTTGTGGCCGGTTCAA GGAGGCAGAAGAGATCATCCGAAATCTGCCATTTGATCCGGGGGTTGGATTCTGGAAGGCGGTTCTCGGAGGGTGTCGAATACATTCAAACGTGGAATTG GGAGAAGTGGCGACACAAAAGATATCGGGGCTGGATCCTGGTGATGTCTCGTCGTACGTGATGCTGTCGAATGCATATGCTGCAGCTGGGAAATGGAGCG ATGCGTCGGGTGTGCGGAGGGAGATGAAGGAGAAAGGAATGGCGAGGGTTAGTGGGTGCAGTTGGATTGAAATCAAAAGCAGAGTTCACGTTTTTACCAA TAGAGATGAGAATCATGAGAGCAAGGATGAGATTTACTTGATGCTCAAGTTTTTGGTGGAGCTGTTGAGAGAGACCAGTAGCTTCCTTGAACAGGATTAT ATGTGA
AA sequence Show only first row Show all	>Lus10034408 pacid=23175907 polypeptide=Lus10034408 locus=Lus10034408.g ID=Lus10034408.BGIv1.0 annot-version=v1.0 MASKLFRLGHCLYFSTKTPALAFDLHSCTAGWTAHQLFDKLPQLDAISANNLIGQLSRQKQHKDAIRVFRGMLYWNITPTQFTFGTVIPLSIAIKDIDLG RQFHCCAVRLGFNSVVFVGTALLDFYAKLVSLHEAQMAFQDINYPNVVSYTTLVHGYLKKGSYKDAIRLFNQMPERNVVSWNMMIGGLSQVGHNEEAVNL FVQMLREGFIPDELTFPCAIIAASNVAAIGIGKSFHACAVKTNCVLDVFVANSLISFYAKCGNMEDSLLVFDDITERTVVSWNAVICGFAQNGRGNDAVK FFNRIVASGLQPNDVTVLGVLWACNHAGLVDDGYSHFIGARINNPSALKPEHYACMVDLLSRCGRFKEAEEIIRNLPFDPGVGFWKAVLGGCRIHSNVEL GEVATQKISGLDPGDVSSYVMLSNAYAAAGKWSDASGVRREMKEKGMARVSGCSWIEIKSRVHVFTNRDENHESKDEIYLMLKFLVELLRETSSFLEQDY M

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42450			Pentatricopeptide repeat (PPR)...		Lus10034408 [exp]	0	1
AT1G09680			Pentatricopeptide repeat (PPR)...		Lus10014170 [exp]	3.6	0.7937
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10035981 [exp]	4.7	0.7688
AT2G41475			Embryo-specific protein 3, (AT...		Lus10043273 [exp]	7.1	0.7468
AT4G34540			NmrA-like negative transcripti...		Lus10023558 [exp]	14.7	0.7065
AT3G61550			RING/U-box superfamily protein...		Lus10036404 [exp]	16.9	0.7661
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020936 [exp]	19.7	0.6906
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002211 [exp]	26.5	0.7020
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10000275 [exp]	29.1	0.7529
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10033585 [exp]	35.2	0.6686
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10012995 [exp]	35.7	0.6776

Compare expression of checked genes

Lus10034408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.