Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25590 103 / 4e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G133600 [exp] 221 / 3e-68 AT3G25590 142 / 2e-38 unknown protein Potri.008G109600 [exp] 213 / 2e-65 AT3G25590 138 / 8e-37 unknown protein Potri.T062072 [exp] 213 / 5e-65 AT3G25590 138 / 8e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034409 pacid=23175999 polypeptide=Lus10034409 locus=Lus10034409.g ID=Lus10034409.BGIv1.0 annot-version=v1.0 ATGAACGACAGAGGCAAAGCTCAGCAGCAGAACAACAACAATGGCGACTTGCTCCTCCATGACGACTCCTCCTCCTACTGTCTCCCTTGCAAGCGACACC CTTCTTCCTCCCCTGCCGTCGGAATCTGCCCTCACTGCCTCAAGGAACGCCTCCTCTCCTTGGTCTGCTCCGACTGCGGCGAGCACCGCCTCTCTTCTTG CTCCTGCTCCATCAACAACAACCACCACTTATTATTTTCCCCTACTCGCACCTCCGTCAGCTCCAACGTCGATGTCGGCAGCGTCGGCCGCGTCTCCGTC CTCATTGAAAACGACGCCTCCTCTCAATCTCAATCTCAGTCTTTCTACCGCCCCAACAATCCGAAATCCAATCGCGACACTAACAGCAACAACAACGAAG TGCTGATTCTGAAGCGGAGTAGCAGCAGCTGCGTCGAGATCAAGCGGAGGAAGGGCGGAGGATTCTGGAAGATCGGGAGGTTCTTCACCACCAAGCGATC TAATAATAAAAACAAGGGAGGAAGCTCCGGAATTTCACACAGCGTGGCGGGAATCGAGGATCGAAACGGCGACGTATGGGTTCTCGATGATTTACCAACC GGCGGTGGATGCGGAGGTGCGATGGTTTCCAGGTCTAGGTCGTTGTGCAGCTTCAGGGGAGGAGTGGGCGGGTTTTTCGGGTCGGAGGACGGTACTTATT CCGGGGCGAGGAGCTCTGTTTCCGGAGCGAGAAGCTCCATCTCAGCCGCTCGGAGCTCCGGGTTCAACGGGCTGGTTTTCGACCCGGATAGGAAGAGCGG GTACAGCGAGTCCGAGCCCAGGAAGAGCGGGTTCGATTTCGAGAAGCGGGAACCTGACGGCGGCGAATGTTATTATCCAACGAGGCGGGTTTTCTCACTC CGAGAAGGGAATTTGAATTTCACCACCGCACACGATTCAGGATTCATCGACCTGAAATTCGATTCGGATTCCAAACCTCCTCCGACGTCGGAGGTGTCCT TGCCGGCGGGAGATTATTATCCCAGATCGTCGGAATTGGGGGCGGGAGATGGCAGGATAGCGGTGAATGACAGGGGGATAAAACGGAGCAGGAAGAGTTT CAAGAGCTGGAGGTGGATTTTCAGGCACCACCACCATAGCAGTAGTAGTGATCAGCATCATATGGGTTGGAAGAAGAAAGACGGTGGAGGTGAAAAGATT AGTAGTGTGGTTAAAGCTCTGTAG
AA sequence Show only first row Show all	>Lus10034409 pacid=23175999 polypeptide=Lus10034409 locus=Lus10034409.g ID=Lus10034409.BGIv1.0 annot-version=v1.0 MNDRGKAQQQNNNNGDLLLHDDSSSYCLPCKRHPSSSPAVGICPHCLKERLLSLVCSDCGEHRLSSCSCSINNNHHLLFSPTRTSVSSNVDVGSVGRVSV LIENDASSQSQSQSFYRPNNPKSNRDTNSNNNEVLILKRSSSSCVEIKRRKGGGFWKIGRFFTTKRSNNKNKGGSSGISHSVAGIEDRNGDVWVLDDLPT GGGCGGAMVSRSRSLCSFRGGVGGFFGSEDGTYSGARSSVSGARSSISAARSSGFNGLVFDPDRKSGYSESEPRKSGFDFEKREPDGGECYYPTRRVFSL REGNLNFTTAHDSGFIDLKFDSDSKPPPTSEVSLPAGDYYPRSSELGAGDGRIAVNDRGIKRSRKSFKSWRWIFRHHHHSSSSDQHHMGWKKKDGGGEKI SSVVKAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25590			unknown protein		Lus10034409 [exp]	0	1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10026084 [exp]	4.5	0.9272
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	4.9	0.9498
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	6.3	0.9488
AT4G09890			Protein of unknown function (D...		Lus10028734 [exp]	6.9	0.9313
AT5G58375			Methyltransferase-related prot...		Lus10008585 [exp]	7.9	0.9268
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	9.5	0.9454
AT2G29340			NAD-dependent epimerase/dehydr...		Lus10004985 [exp]	9.8	0.9462
					Lus10041251 [exp]	10.4	0.9424
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10025854 [exp]	11.0	0.9482
AT4G22560			unknown protein		Lus10028927 [exp]	12.4	0.9312

Compare expression of checked genes

Lus10034409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.