Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13560 509 / 0 AAPT1, ATAAPT1 aminoalcoholphosphotransferase 1 (.1.2) AT3G25585 478 / 2e-170 AAPT2, ATAAPT2 aminoalcoholphosphotransferase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019149 [exp] 385 / 9e-130 AT1G13560 477 / 7e-165 aminoalcoholphosphotransferase 1 (.1.2) Lus10002042 [exp] 86 / 1e-20 AT1G13560 81 / 4e-19 aminoalcoholphosphotransferase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109833 [exp] 496 / 9e-178 AT1G13560 684 / 0.0 aminoalcoholphosphotransferase 1 (.1.2) Potri.T031036 [exp] 493 / 2e-176 AT1G13560 682 / 0.0 aminoalcoholphosphotransferase 1 (.1.2) Potri.010G133800 [exp] 492 / 6e-175 AT1G13560 695 / 0.0 aminoalcoholphosphotransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01066 [flax] [poplar] CDP-OH_P_transf CDP-alcohol phosphatidyltransferase
Representative CDS sequence Show only first row Show all	>Lus10034410 pacid=23175981 polypeptide=Lus10034410 locus=Lus10034410.g ID=Lus10034410.BGIv1.0 annot-version=v1.0 ATGGGGTACATAGGGTCCCATGGCATTCAAGCGCTTCATAGGTACAAATACAGTGGCGTCGATCACTCCTACGTTGCCAAATATGTCTTGCAGCCCTTCT GGTCCCGATTCGTTTACTTCTTCCCTCTATGGATGCCACCAAACATGACATTTGATGCTGTTGATGGAAAGCAAGCACGGAGAACCAACTCTTCCAGTCC ATTGGGCGAGCTGTTTGACCATGGATGTGATGCTCTTGCATGTGCATTTGAAGCCATGGCTTTCGGCAGCACTGCTATGTGTGGAAGATATACTTTTTGG TTCTGGGTCATCTCAGCTATTCCATTTTATTTAGCAACATGGGAAAGTTATTTCACCAATACTCTCATTCTTCCGGTGGTCAATGGGCCTACAGAGGGTC TGATGCTCATCTATCTCGCTCATTTCTTCACGGCCATAGTGGGTGCTGAATGGTGGGCTCAACAATTTGGACAGTCTTTGCCCATAGTGAGTTGGGTGCC ATTTGTTAGTGATATTCCAACATTCAAAGCAGTGTTGTACCTAATGATTGCTTTTGCAGTGATACCTACAATTTACTCCAATGTGACGAATGTTAACAAC GTTGTTCAGGCTAGAAAGGGCAGTATGTCACTGGCCTTAGCAATGGGGAGAATGATTCTCGCTCACTTGTGTGACGAACCAAAAGGGTTGAAAACCAACA TGTGCATGTCCCTGTTGTTTCTACCTTTAGCGGTTGCAAATGCACTTACAGCCAAACTGAATGACGGAGTTCCATTGGTAGATGAGTTCTGGGTTCTTCT TGGTTATTGTTCATTCACAGTGGGTCTGTATTTGCACTTTGCTACTTCAGTCATTCATGAAATTACCACAGCATTGGGGATCTACTGCTTCAGGATAACA AGAAAAGAAGCTTGA
AA sequence Show only first row Show all	>Lus10034410 pacid=23175981 polypeptide=Lus10034410 locus=Lus10034410.g ID=Lus10034410.BGIv1.0 annot-version=v1.0 MGYIGSHGIQALHRYKYSGVDHSYVAKYVLQPFWSRFVYFFPLWMPPNMTFDAVDGKQARRTNSSSPLGELFDHGCDALACAFEAMAFGSTAMCGRYTFW FWVISAIPFYLATWESYFTNTLILPVVNGPTEGLMLIYLAHFFTAIVGAEWWAQQFGQSLPIVSWVPFVSDIPTFKAVLYLMIAFAVIPTIYSNVTNVNN VVQARKGSMSLALAMGRMILAHLCDEPKGLKTNMCMSLLFLPLAVANALTAKLNDGVPLVDEFWVLLGYCSFTVGLYLHFATSVIHEITTALGIYCFRIT RKEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25585		AAPT2, ATAAPT2	aminoalcoholphosphotransferase...		Lus10034410 [exp]	0	1
AT1G24560			unknown protein		Lus10038257 [exp]	2.6	0.8503
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	5.7	0.8239
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10000537 [exp]	5.9	0.8158
AT2G46520			cellular apoptosis susceptibil...		Lus10026635 [exp]	6.3	0.7959
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039032 [exp]	7.2	0.7795
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	10.1	0.8192
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	11.0	0.7864
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	11.1	0.8186
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	21.5	0.8081
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	22.3	0.7961

Compare expression of checked genes

Lus10034410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.