Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G41290 196 / 9e-61 SSL2 strictosidine synthase-like 2 (.1) AT5G22020 192 / 6e-59 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G08470 186 / 1e-56 SSL3 strictosidine synthase-like 3 (.1) AT3G59530 174 / 1e-51 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT1G74020 155 / 4e-45 SS2 strictosidine synthase 2 (.1) AT3G57010 155 / 6e-45 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G74010 152 / 3e-44 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G41300 153 / 8e-44 SSL1 strictosidine synthase-like 1 (.1) AT3G57020 152 / 1e-43 Calcium-dependent phosphotriesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019148 [exp] 314 / 9e-110 AT3G57030 123 / 3e-34 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006330 [exp] 270 / 5e-90 AT3G57030 224 / 2e-70 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006331 [exp] 268 / 5e-89 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10029599 [exp] 262 / 5e-87 AT3G57030 204 / 3e-63 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10012095 [exp] 193 / 1e-59 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1) Lus10008451 [exp] 192 / 6e-59 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10008151 [exp] 179 / 1e-53 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019377 [exp] 179 / 2e-53 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10013370 [exp] 172 / 2e-51 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109966 [exp] 320 / 2e-109 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.T015518 [exp] 320 / 2e-109 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.006G040900 [exp] 228 / 8e-73 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037900 [exp] 221 / 3e-70 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.016G037700 [exp] 215 / 1e-67 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.001G214500 [exp] 190 / 4e-58 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.007G130700 [exp] 181 / 3e-54 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 174 / 1e-51 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.015G037700 [exp] 145 / 2e-41 AT1G74000 218 / 7e-69 strictosidine synthase 3 (.1) Potri.012G046200 [exp] 144 / 5e-41 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03088 [flax] [poplar] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Lus10034411 pacid=23175894 polypeptide=Lus10034411 locus=Lus10034411.g ID=Lus10034411.BGIv1.0 annot-version=v1.0 ATGTTGAAAACAGAGGATCCTTATTATGAGGAAACAGACAGGAAGGTTTGCGATGGGTCAAGGAATCCGAAGAGAGAGCCCAAATGTGGGAGGCCGTTGG GCCTGAAGTTCAGCCCGTCAACGTGTGAGCTTTACATAGCCGATGCATACTTTGGGCTGCTGGTGGTGGGCCCAAAAGGCGGTGTTGCTCGTAAACTAGT TACGGCTTCCGCTGAAGGGCTCCCTTTCAAGTTCTTGAACGCTCTGGATATTCACTCCACTACCGGCGTTGTTTACTTCACTGACTCCAGCATCAATTTC CAACGAAGGAACTGGATACTATCAATCATAAGCATGGACAGAACAGGGAAGGTAATGAGCTACGATCCACGCACCAAGAAGCTAACGGTTCTAATCGACG GGCTAGGATTCCCGAACGGGGTAGCTCTGAGTAAAGACAACTCCTTTCTTCTAGTTGCAGAGACAAGCACCCTCAGCATCCTCAAACTCCCTCTAATCAA CAATACCAACAATAAGATTGAGCTTTTTGCTCAGCTGGAGAGATTCCCGGACAACATAAAGAGGAATCCCAAAGGGGATGGGTTCTGGGTTGCATTGAAC TCCGGCAGGGGCAAGATTACTGTACCAGAATCAGAACAAAAAACAGAGGATGTTGATGTTGATCCGGTGGGTGTGAAGCTGAGTGAAGATGGGGAAGTAG TGAAGGTGTTGGATGGCGGCGGTGGGGATGCTTTGAATTCCGTCAGTGAAGTTTTAGAAGACGGGAATGGGAACCTCTGGGTTGGCTCTGCTGTTCACTC CTTCGTTGGTCGGATTCAGTAA
AA sequence Show only first row Show all	>Lus10034411 pacid=23175894 polypeptide=Lus10034411 locus=Lus10034411.g ID=Lus10034411.BGIv1.0 annot-version=v1.0 MLKTEDPYYEETDRKVCDGSRNPKREPKCGRPLGLKFSPSTCELYIADAYFGLLVVGPKGGVARKLVTASAEGLPFKFLNALDIHSTTGVVYFTDSSINF QRRNWILSIISMDRTGKVMSYDPRTKKLTVLIDGLGFPNGVALSKDNSFLLVAETSTLSILKLPLINNTNNKIELFAQLERFPDNIKRNPKGDGFWVALN SGRGKITVPESEQKTEDVDVDPVGVKLSEDGEVVKVLDGGGGDALNSVSEVLEDGNGNLWVGSAVHSFVGRIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57030			Calcium-dependent phosphotries...		Lus10034411 [exp]	0	1
					Lus10011061 [exp]	8.4	0.9549
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10008894 [exp]	8.6	0.9274
AT5G36930			Disease resistance protein (TI...		Lus10041606 [exp]	10.3	0.8817
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	11.8	0.9549
AT3G60810			unknown protein		Lus10004025 [exp]	13.3	0.9088
					Lus10022145 [exp]	14.5	0.9549
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	16.7	0.9549
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001887 [exp]	17.3	0.8930
AT2G28320			Pleckstrin homology (PH) and l...		Lus10023522 [exp]	18.7	0.9549
					Lus10024550 [exp]	20.5	0.9549

Compare expression of checked genes

Lus10034411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.