Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 475 / 4e-167 F-box/RNI-like superfamily protein (.1) AT1G32375 100 / 5e-23 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G10400 99 / 1e-22 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G56370 92 / 4e-20 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G56420 89 / 4e-19 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G22610 88 / 1e-18 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G58860 86 / 4e-18 F-box/RNI-like superfamily protein (.1) AT5G56690 85 / 7e-18 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G56390 85 / 1e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G50270 84 / 1e-17 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019144 [exp] 803 / 0 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 547 / 0 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10030569 [exp] 183 / 5e-53 AT1G13570 183 / 5e-53 F-box/RNI-like superfamily protein (.1) Lus10030920 [exp] 181 / 3e-52 AT1G13570 179 / 1e-51 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 164 / 7e-46 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 147 / 2e-39 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 145 / 1e-38 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10006346 [exp] 133 / 1e-34 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 126 / 6e-32 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 644 / 0 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 520 / 0 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 283 / 6e-92 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 267 / 3e-85 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 215 / 3e-65 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 92 / 5e-20 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 89 / 5e-19 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.014G163866 [exp] 82 / 3e-17 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.017G092301 [exp] 80 / 4e-16 AT1G13570 66 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 80 / 4e-16 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF07723 [flax] [poplar] LRR_2 Leucine Rich Repeat CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain CL0271 [flax] [poplar] PF08387 [flax] [poplar] FBD FBD
Representative CDS sequence Show only first row Show all	>Lus10034414 pacid=23175833 polypeptide=Lus10034414 locus=Lus10034414.g ID=Lus10034414.BGIv1.0 annot-version=v1.0 ATGGAGGAGACTGAGTTTCCGGACTTGATAACTGATCTGCCTCAGAGCATCTTGGAGAGCATTCTCTCCAGATTGCCCATAAGGGATGCTGTAAGAACAA GCATTTTGTCAACCAAATGGAGGTACCGTTGGACTATACTCAGCCAGCTAGTTTTCGACGACAGCTGTGTAGATGCCTGCAGTGAGAGGTCACTGGTCGA GAGCAACCTTATAAGCTTCGTAACTCGCACATTGTTTCTCCATCAAGGACCAATTCAGAAGTTCCAGCTCAGTACTTCGTACTTGCAATGCTGTCCCGAT TTAGAGCAGTGGCTTCTGTTTGTGACAAGAACCGATGTCAAGGAGCTGATTCTTGAGCTAGGAGAGTGTGAATGGTTCAGAATACCGTCCTCTCTCTTTA ACTGCAAAAGGTTGACCCGTCTAGAGCTATGTCGATGTGAATTCAACCCGCCGCCAAGTTTTAAAAGCTTTCCGCATTTGAGAAGCCTCAATCTTTACGA GGTTCTCGTTGGTCGGGAGGCAATCGAGAGTCTTATCTCTAATTGCCCACTCTTGGAAAGTCTTTCGTTATCATACTTTGACAGTCTAGCCCTTACTATC CGTGCTCCAAATCTCAAGTACTTGTGCTTGGAAGGTGAATTCGCAGATATATGCCTGGAAAACACTCCAAATTTGCTTGCCTTGTCAATTGCTGTGTATA TGACTGAAGACACTGCTGAGCAATTGGATCAAAGCTCCTGTTGCAACTTCATCAACTTTCTCGGCGGTGTTCCACTTCTTGAGAGACTCATTGGTCATAT CTACTTTACAAAGTATTTGAGTGTAGGTTATCCAGGAAAGCTTCAGATTACATACAGCCACCTCAGAGTTGCTGAACTATATCAAGTAAGTTTCGACGAT ATGAAAGAGATTTTGGTCGTTCTTCGCTTGATCACCAATGCTCCCAACTTAACAGAATTTAGAATCTCGGGCTCTTCACATACATTAGCTGCTATGGAAG CACCTGACTTGGCATTTTGGGCAGAAGAGTGCCCTAAAGATTTCATCTTTACACAGCTCACCCATGTAAAGATGACTGACATGTCCGGTGTACCCCATGA GATGGAGTTGATCAAGTTCTTGCTAGCGAACTCACCGGCAATGGAGACGATGAGCATCACACCTTCTGTATATGTGACTACTGATGGCAGGTTGGCCATG TTGATTGAGTTGCTGAAGTTTCGCCGCGCTTCTCCTGAAGCTGAGATCTCATTCCTCAAAGATTGA
AA sequence Show only first row Show all	>Lus10034414 pacid=23175833 polypeptide=Lus10034414 locus=Lus10034414.g ID=Lus10034414.BGIv1.0 annot-version=v1.0 MEETEFPDLITDLPQSILESILSRLPIRDAVRTSILSTKWRYRWTILSQLVFDDSCVDACSERSLVESNLISFVTRTLFLHQGPIQKFQLSTSYLQCCPD LEQWLLFVTRTDVKELILELGECEWFRIPSSLFNCKRLTRLELCRCEFNPPPSFKSFPHLRSLNLYEVLVGREAIESLISNCPLLESLSLSYFDSLALTI RAPNLKYLCLEGEFADICLENTPNLLALSIAVYMTEDTAEQLDQSSCCNFINFLGGVPLLERLIGHIYFTKYLSVGYPGKLQITYSHLRVAELYQVSFDD MKEILVVLRLITNAPNLTEFRISGSSHTLAAMEAPDLAFWAEECPKDFIFTQLTHVKMTDMSGVPHEMELIKFLLANSPAMETMSITPSVYVTTDGRLAM LIELLKFRRASPEAEISFLKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034414 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034415 [exp]	3.0	0.8506
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	6.4	0.8636
					Lus10025204 [exp]	10.0	0.8549
AT2G22905			Expressed protein (.1)		Lus10012094 [exp]	13.7	0.8468
AT3G44670			Disease resistance protein (TI...		Lus10008525 [exp]	14.7	0.8183
AT4G28400			Protein phosphatase 2C family ...		Lus10028094 [exp]	14.8	0.8459
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	15.5	0.7797
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	18.2	0.8188
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022358 [exp]	18.4	0.7980
AT2G17080			Arabidopsis protein of unknown...		Lus10012368 [exp]	19.2	0.8232

Compare expression of checked genes

Lus10034414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.