Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70780 169 / 6e-55 unknown protein AT1G23150 162 / 3e-52 unknown protein AT5G37730 102 / 6e-28 unknown protein AT2G27830 52 / 5e-09 unknown protein AT4G22758 52 / 1e-08 unknown protein AT2G01554 46 / 5e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019143 [exp] 269 / 2e-94 AT1G70780 167 / 4e-54 unknown protein Lus10031920 [exp] 209 / 1e-70 AT1G70780 172 / 4e-56 unknown protein Lus10035084 [exp] 199 / 1e-66 AT1G70780 171 / 7e-56 unknown protein Lus10017628 [exp] 102 / 1e-28 AT5G37730 102 / 3e-28 unknown protein Lus10027525 [exp] 97 / 2e-26 AT1G70780 104 / 3e-29 unknown protein Lus10039287 [exp] 97 / 2e-26 AT1G70780 104 / 4e-29 unknown protein Lus10009131 [exp] 87 / 2e-22 AT1G70780 92 / 1e-24 unknown protein Lus10033584 [exp] 57 / 3e-11 AT5G37730 78 / 2e-19 unknown protein Lus10020544 [exp] 53 / 5e-09 AT2G27830 181 / 3e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131600 [exp] 182 / 4e-60 AT1G70780 183 / 2e-60 unknown protein Potri.010G110800 [exp] 181 / 7e-60 AT1G70780 188 / 9e-63 unknown protein Potri.017G125300 [exp] 113 / 7e-33 AT1G70780 109 / 2e-31 unknown protein Potri.004G089700 [exp] 113 / 1e-32 AT5G37730 108 / 1e-30 unknown protein Potri.004G188600 [exp] 57 / 1e-10 AT2G27830 160 / 5e-50 unknown protein Potri.009G149200 [exp] 50 / 3e-08 AT2G27830 183 / 6e-59 unknown protein Potri.003G116300 [exp] 50 / 5e-08 AT2G27830 125 / 2e-36 unknown protein Potri.003G116200 [exp] 44 / 1e-05 AT4G22758 131 / 5e-37 unknown protein Potri.001G116200 [exp] 39 / 0.0003 AT4G22758 117 / 5e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034416 pacid=23175972 polypeptide=Lus10034416 locus=Lus10034416.g ID=Lus10034416.BGIv1.0 annot-version=v1.0 ATGCTGCTTCACAAGACGAAGAAGAACCAGGGCGGCAACCGCCTGTTGGTTAGCGTGACCGTTCTAGGCAGCACTGGACCGATCCGGTTCGTAGTGAGGG AGAAAGAGCTTGTGGCTGCTGTTATTGACACCGCGTTGAAGTCCTACGCTCGCGAGGGGCGGCTTCCGGTGCTCGGCTCTAATCTGAACGATTTCTTCCT CTACTGTCCGAGTGCTGGCTCGGGAGCTCTGAGTCCTTGGGAGACTATTGGATCCATGGGTTGCCGAAACTTCATGCTGTGCAAGAAGTCGACAGAGATG AAGATGAAGATGGCTGAAGAAGCTGCAAGGACTTCGCCCTCATCAGCTGTTGTCCGCCAGGGGAGTGGCAGGAGGTGGAAGACGTGGATCAACAAGTCTT TCAATCTCAGGATTTATTCTCATTGA
AA sequence Show only first row Show all	>Lus10034416 pacid=23175972 polypeptide=Lus10034416 locus=Lus10034416.g ID=Lus10034416.BGIv1.0 annot-version=v1.0 MLLHKTKKNQGGNRLLVSVTVLGSTGPIRFVVREKELVAAVIDTALKSYAREGRLPVLGSNLNDFFLYCPSAGSGALSPWETIGSMGCRNFMLCKKSTEM KMKMAEEAARTSPSSAVVRQGSGRRWKTWINKSFNLRIYSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70780			unknown protein		Lus10034416 [exp]	0	1
AT2G25250			unknown protein		Lus10041025 [exp]	5.1	0.8655
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10030243 [exp]	7.7	0.8412
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	8.7	0.8168
AT5G44060			unknown protein		Lus10003619 [exp]	10.1	0.8279
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042797 [exp]	14.5	0.7756
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Lus10024871 [exp]	18.5	0.7730
AT5G42200			RING/U-box superfamily protein...		Lus10005617 [exp]	22.6	0.8169
AT1G80310		MOT2	molybdate transporter 2, sulfa...		Lus10038286 [exp]	23.0	0.7985
AT5G42570			B-cell receptor-associated 31-...		Lus10035283 [exp]	25.0	0.7954
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10019967 [exp]	26.5	0.7836

Compare expression of checked genes

Lus10034416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.